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2015-03-19Minor updates to the marker regression code for R/qtl, layout mostlyDannyArends
2015-03-19Receiving the chosen method and model in the python backend codeDannyArends
2015-03-19Adding the method and model option in the userinterfaceDannyArends
2015-03-19Adding the method and model parameters of R/qtl so that we can have the user ↵DannyArends
choose to use non-parametric QTL mapping, binary phenotypes, etc
2015-03-18Begun adding pair scan option, fixed bug if no closest markers foundzsloan
2015-03-18Adding a fix to purge non-existing markers as covariates for the R/qtl analysiszsloan
2015-03-18Merge branch 'pylmm0002'Pjotr Prins
Conflicts: wqflask/wqflask/my_pylmm/pyLMM/lmm.py
2015-03-18Some more minor code/comment updates, making code a little shorterDannyArends
2015-03-18Cleaning up some of the code, updating output and adding/changing commentsDannyArends
2015-03-17Added r function for setting genotypes and generating the cross filezsloan
2015-03-17Moved print statement for non-humans only inside if statementzsloan
2015-03-17Merge branch 'master' of github.com:pjotrp/genenetwork2 into pjotr_testzsloan
2015-03-17Added permutations and cleaned code for rqtlzsloan
2015-03-17Merge branch 'master' of https://github.com/zsloan/genenetwork2 into pylmm0001Pjotr Prins
2015-03-17Converting an absolute path to a relative pathDannyArends
2015-03-17Added files for bootstrap icons and scatter-plot css fileZachary Sloan
2015-03-17Improved rqtl codeZachary Sloan
2015-03-17Moved scatter-plot to the right of options instead of belowZachary Sloan
2015-03-17Moved setting of geno variable into non-humanZachary Sloan
2015-03-17Release 0.50-gn2-pre1Pjotr Prins
2015-03-17GWAS: sort results so we always get the same listPjotr Prins
2015-03-17README: Started release information and versioning of modulePjotr Prins
2015-03-17runlmm: Explicit handling of missing phenotypesPjotr Prins
2015-03-17GWAS: should be correct nowPjotr Prins
2015-03-17GWAS: one result is missingPjotr Prins
2015-03-17lmm1: fixed a few regressions introduced while debuggingPjotr Prins
2015-03-17lmm.py: bring to original statePjotr Prins
2015-03-17GWAS multi-core: Tweak queuePjotr Prins
2015-03-16GWAS: results get returnedPjotr Prins
2015-03-16Adding GWAS codePjotr Prins
2015-03-16Adding multi-core GWASPjotr Prins
2015-03-16Output addedPjotr Prins
2015-03-16Refactoring eigenvalue KvaKvePjotr Prins
2015-03-15CommentPjotr Prins
2015-03-15A little cleanupPjotr Prins
2015-03-15Added multi-core kinship supportPjotr Prins
2015-03-14Threading: Sleep while waitingPjotr Prins
2015-03-14Allow the GC to do its jobPjotr Prins
2015-03-14Allow queue to be 2xCPU. Disable output filesPjotr Prins
2015-03-14Kinship multi-core: don't overload the queue with jobsPjotr Prins
2015-03-14Parallel K calculation is fixedPjotr Prins
2015-03-14Tests and indentationPjotr Prins
2015-03-14Conditional run of K calculationPjotr Prins
2015-03-14Adding testsPjotr Prins
2015-03-14Adding assertionsPjotr Prins
2015-03-14Allow empty K to be passed inPjotr Prins
2015-03-14Removing all references to is_testingPjotr Prins
2015-03-14Working on kinship: GN2 and simple matrix multiplicatino agreePjotr Prins
2015-03-14More MAFPjotr Prins
2015-03-14Replace missing values with MAFPjotr Prins
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