| Age | Commit message (Expand) | Author |
|---|
| 2021-09-22 | Cleanup code...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Remove unnecessary console.log(...) statements that were used in
development
* Re-arrange the html elements
* Rename element id
| Frederick Muriuki Muriithi |
| 2021-09-22 | Test heatmap creation from serialized figure...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Attempt using the figure, serialized as JSON, to display the
clustered heatmap.
| Frederick Muriuki Muriithi |
| 2021-09-20 | Returned the GN1 url to gn1.genenetwork.org since it's apparently working wel... | zsloan |
| 2021-09-20 | Removed the reaper_version selection option, since original qtlreaper is no l... | zsloan |
| 2021-09-20 | Added back the option to edit privileges on trait pages, since the metadata e... | zsloan |
| 2021-09-20 | Prevent the default submit action...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Prevent the default submit action.
| Frederick Muriuki Muriithi |
| 2021-09-20 | Fix id used. | Frederick Muriuki Muriithi |
| 2021-09-20 | Move "Clustered Heatmap" button to separate form...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Move the button out of the "export_form" into a new "heatmaps_form"
to avoid some weird JS interaction that showed up.
| Frederick Muriuki Muriithi |
| 2021-09-20 | Implement proof-of-concept code to submit data...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Implement some javascript to activate the "Clustered Heatmap"
button.
This commit provides a proof-of-concept implementation to help with
identifying the requirements for sending and receiving of the
heatmaps data.
| Frederick Muriuki Muriithi |
| 2021-09-20 | Provide UI elements for clustered heatmap generation...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* wqflask/wqflask/collect.py: provide hard-coded URL for testing
* wqflask/wqflask/templates/collections/view.html: provide button
Provide a button to trigger the heatmap generation. As a test, we
also provide a hard-coded URL for the API endpoint to get the
heatmap data.
| Frederick Muriuki Muriithi |
| 2021-09-16 | wqflask: views: Redirect to the correct URL after phenotype update | BonfaceKilz |
| 2021-09-14 | Replace / with _ in the mapping results filename, due to / causing issues wit... | zsloan |
| 2021-09-14 | Replace / with _ in the file hashes in rqtl_mapping.py, since they get transl... | zsloan |
| 2021-09-13 | Change mapping export filename to use the path passed from run_mapping, inste... | zsloan |
| 2021-09-13 | Change mapping export filename to use the trait hash | zsloan |
| 2021-09-13 | Add trait name and trait hash to exported mapping results | zsloan |
| 2021-09-13 | Include some extra metadata in the mapping page details (in addition to the f... | zsloan |
| 2021-09-13 | Change Genotype File text to only show the meaningful genotype deescription | zsloan |
| 2021-09-13 | Temporarily point the View in GN1 button to gn1-lily.genenetwork.org since so... | zsloan |
| 2021-09-11 | Add Jupyter Notebook Launcher to Tools dropdown menu | jgart |
| 2021-09-10 | Fix issue with the way the template was checking if genofile_string was set; ... | zsloan |
| 2021-09-10 | Removed encoding, since it's apparently not needed since the Python 3 switcho... | zsloan |
| 2021-09-09 | Change trait name to display name in the metadata at the top of the page (so ... | zsloan |
| 2021-09-09 | Replaced trait name with trait display name in display_mapping_results so the... | zsloan |
| 2021-09-07 | Add trait hash and datetime to mapping figure | zsloan |
| 2021-09-07 | Add timer to loading page to track how long the process has been running | zsloan |
| 2021-09-05 | Fixed issue that caused sample data to not be fetched correctly; there's some... | zsloan |
| 2021-09-03 | Allow categorical_var_list to be passed as a template variable | zsloan |
| 2021-09-03 | Fix issue that caused javascript to not work on the R/qtl mapping result page... | zsloan |
| 2021-09-03 | Fix issue where values written to phenotype file for R/qtl sometimes had trai... | zsloan |
| 2021-08-25 | Fix issue where correlation results weren't included parents/f1s | zsloan |
| 2021-08-25 | Fixed issue in get_diff_of_vals that caused the diff to be calculated wrong (... | zsloan |
| 2021-08-25 | Add map scale option that was missing for groups with only a single genotype ... | zsloan |
| 2021-08-25 | Fix issue that could cause an error when doing cM mapping | zsloan |
| 2021-08-25 | Fix issue that could cause mapping_scale to not be set correctly in show_trai... | zsloan |
| 2021-08-23 | Removed unused variable from list of 'wanted' variables for mapping | zsloan |
| 2021-08-23 | Fixed issue with the way categorical_vars and perm_strata were being passed t... | zsloan |
| 2021-08-23 | Account for situations where the minimum permutation value is also above webq... | zsloan |
| 2021-08-23 | Fix get_perm_strata to usethe Ids for case attributes instead of names + allo... | zsloan |
| 2021-08-23 | Fix the way categorical_var_list is set to account for case attribute Ids bei... | zsloan |
| 2021-08-23 | Include categorical_vars in mapping_results.html so they're included when rec... | zsloan |
| 2021-08-23 | For some reason sample_data was being set twice, and the second time used a t... | zsloan |
| 2021-08-20 | Fixed some logic in trait.py that could cause a problem if a dataset_name was... | zsloan |
| 2021-08-20 | Fix issue where attempting to get the diff of vals for Temp traits was causin... | zsloan |
| 2021-08-20 | startup_config.py: Add DebugToobarExtension for wsgi DEBUG mode...* wqflask/utility/startup_config.py (app_config): Add
DebugToolbarExtension
| BonfaceKilz |
| 2021-08-19 | Change color for Submit button when selecting covariates + move Back button t... | zsloan |
| 2021-08-19 | Fixed R/qtl 'select covariates' buttons to be the same as the changed ones fo... | zsloan |
| 2021-08-19 | Fixed issue in JS that caused filter_by_value to not work for case attributes | zsloan |
| 2021-08-19 | Fixed the way the drop-down for Filter by Value set values for the case attri... | zsloan |
| 2021-08-19 | Added type='button' to the mapping compute buttons in order to prevent them f... | zsloan |
