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2021-10-10ui:show phenotypes pageAlexander Kabui
2021-10-10minor fixes for uiAlexander Kabui
2021-10-10modifications for wgcna form pageAlexander Kabui
2021-10-10enable wgcna in gn2 toolbarAlexander Kabui
2021-10-10pep8 formatting && remove unused functionsAlexander Kabui
2021-10-10call run_wgcna in views && render test templateAlexander Kabui
2021-10-10pep8 formatting fix for parsing response dataAlexander Kabui
2021-10-09add function to call wgcna apiAlexander Kabui
2021-10-09add function to process trait sample dataAlexander Kabui
2021-10-09function to fetch trait dataAlexander Kabui
2021-10-09add function to process image dataAlexander Kabui
2021-10-09unittest for processing wgcna outputAlexander Kabui
2021-10-09add function to process gn3 wgcna outputAlexander Kabui
2021-10-08Fixed some issues with scale and score_type in mapping export + include ↵zsloan
mapping method in export filename
2021-10-08Fix issue where outliers weren't being highlighted for rows drawn by ↵zsloan
Scroller (so all rows beyond a certain point)
2021-10-06Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵Frederick Muriuki Muriithi
clustered_heatmaps
2021-10-06display imagesAlexander Kabui
2021-10-06Enable selection of heatmap orientationFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Provide the user with the UI elements to enable them select the orientation of the heatmap that will be produced.
2021-10-06tests: test_run_mapping: Add missing "name" attribute to testsBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing callsBonfaceKilz
After adding the missing attribute to "self.trait", we need to also need to update some missing calls.
2021-10-06tests: test_run_mapping: Fix failing assert when getting perm strataBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing attribute to "self.trait"BonfaceKilz
2021-10-06tests: test_run_mapping: Add missing positional argument "vals_hash"BonfaceKilz
2021-10-06add datatable for eigengenesAlexander Kabui
2021-10-05Merge branch 'testing' into feature/add_resizeable_columnszsloan
2021-10-05code format for wgcna results fileAlexander Kabui
2021-10-05js formattingAlexander Kabui
2021-10-05move xterm code to setupAlexander Kabui
2021-10-05work on wgcna_setup formAlexander Kabui
2021-10-04Changed get_user_groups to pull both the ID and details in the for loop from ↵zsloan
group_list by using group_list.items()
2021-10-04Add group link for user member groupszsloan
2021-10-04wqflask: resource_manager: Remove loggerBonfaceKilz
2021-10-04Remove "_scripts.html" and all it's referencesBonfaceKilz
2021-10-04new_security: login_user.html: Delete commented out blockBonfaceKilz
2021-10-04Replace hard-coded e-mails with gn-proxy queriesBonfaceKilz
* wqflask/wqflask/decorators.py (edit_access_required.wrap): Query the proxy to see the access rights of a given user.
2021-10-04Rename "admin_login_required" to "edit_access_required"BonfaceKilz
2021-10-01add xterm web terminalAlexander Kabui
2021-09-29test template for gn3 wgcnaAlexander Kabui
2021-09-27Apply pep-8 formattingBonfaceKilz
2021-09-27Remove variable-- named after a python keyword-- called "list"BonfaceKilz
2021-09-27Remove lengthy stack trace for 404, 400, 408 status codesBonfaceKilz
The stack trace causes the log file to grow into unmanageable sizes over time.
2021-09-25Add progress indicator. Handle errors.Frederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * Add a progress indicator to show the user that there is some progress happening, so that they can wait. Add a function to handle any errors that arise.
2021-09-25Remove hard-coded URL; use configured URLFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * etc/default_settings.py: remove duplicate configuration variable * wqflask/wqflask/collect.py: use the configured url for the API server Use the configured URL rather that the hard-coded URL that was used for testing out the clustered heatmap generation.
2021-09-23Clear any existing image on subsequent clicksFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * If the user clicks on the "Clustered Heatmap" button, the system should remove any previously existing clustered heatmap image and replace it with the new image.
2021-09-23Move the heatmap display area to before the tableFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * Move the heatmap area to before the data table, so that once the heatmap is generated, it shows up before the table, and the user is able to see what happened.
2021-09-22Removed the Control for (marker) option from R/qtl for now since Danny ↵zsloan
mentioned it isn't working correctly
2021-09-22Fixed issue where the control marker parameter was being passed incorrectly ↵zsloan
to GN3 (should be just 'control' but was previously passed as 'control_marker')
2021-09-22Only show most search page options if results exist; otherwise provide a ↵zsloan
link back to the home page
2021-09-22Added type='button' to the Delete Collection button within collections/view, ↵zsloan
since without it it attempts to submit the form encapsulating the button (export in this case)
2021-09-22Remove references to reaper_version and code for running old qtlreaperzsloan
generated by cgit v1.2.3 (git 2.44.0) at 2024-12-03 07:33:10 +0000