Age | Commit message (Expand) | Author |
2016-10-06 | Do not open new page in browser on URL | Pjotr Prins |
2016-10-06 | Removed dead URL | Pjotr Prins |
2016-10-06 | URL: replaced dead Memphis URL with current GN2 machine | Pjotr Prins |
2016-10-06 | URL: prevent opening new pages | Pjotr Prins |
2016-10-06 | URL: updated Amigo reference on front page | Pjotr Prins |
2016-10-06 | URLs: update GO database URL and removed opening new browser pages | Pjotr Prins |
2016-10-06 | Logger: add more granular debug messages | Pjotr Prins |
2016-10-06 | CTL requires 2 traits minimally. Also use traits/phenotypes consistently | Pjotr Prins |
2016-10-05 | CTL now displays proper error if fewer than 4 traits are selected. Also, WGCN......I also improved the formatting for the html for both CTl and WGCNA Analysis.
| zsloan |
2016-10-05 | Show datasets only on debug | Pjotr Prins |
2016-10-05 | Minor edit | Pjotr Prins |
2016-10-05 | Reverted on genotype selector on page show_trait_mapping_tools.html - pending... | Pjotr Prins |
2016-10-05 | print statements should be logger | Pjotr Prins |
2016-10-05 | print statements should be logger | Pjotr Prins |
2016-10-05 | Merge branch 'zsloan' into json | Pjotr Prins |
2016-10-05 | Merge branch 'master' of github.com:zsloan/genenetwork2 into zsloan | Pjotr Prins |
2016-10-04 | Fixed issue that caused adding to existing collections when not logged in to ......The problem was that it would get the collection name from the "new_collection" field instead of the "existing_collections" dropdown.
| zsloan |
2016-10-04 | Merge branch 'master' of github.com:zsloan/genenetwork2 into zsloan | Pjotr Prins |
2016-10-03 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan |
2016-10-03 | Fixed problem that caused R/qtl with permutations to not work correctly | zsloan |
2016-10-03 | Moved rqtl mapping code out of marker_regression and into its own file....Later we will want to run all mapping methods outside of the web server, though
| zsloan |
2016-10-03 | Config: supporting JSON OVERRIDES | Pjotr Prins |
2016-10-03 | Debug: sanitize some output | Pjotr Prins |
2016-10-03 | Config: use server port setting | Pjotr Prins |
2016-10-03 | Error page: reduce cookie size | Pjotr Prins |
2016-10-02 | Error page: trim error messages | Pjotr Prins |
2016-10-02 | Errors: added time stamps in UTC | Pjotr Prins |
2016-10-02 | Error page: also display the URL | Pjotr Prins |
2016-10-02 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Pjotr Prins |
2016-10-02 | Error page: use cookies to fixate the animation for one error | Pjotr Prins |
2016-10-02 | Error: remove test error | Pjotr Prins |
2016-10-02 | Error screen improvements with animated gifs | Pjotr Prins |
2016-09-30 | Merge pull request #192 from lyan6/master...Fix global search "il6" for "Internal Server Error". Add single quote… | Pjotr Prins |
2016-09-30 | Add missing __init__.py | Pjotr Prins |
2016-09-30 | Add logging for qtlreaper | Pjotr Prins |
2016-09-29 | Fix global search "il6" for "Internal Server Error". Add single quotes into M... | Lei Yan |
2016-09-27 | Conflict in wqflask/wqflask/templates/show_trait_mapping_tools.html | zsloan |
2016-09-26 | Test: mechanical Rob executes scanone test | Pjotr Prins |
2016-09-25 | Logger: use output for assessing mapping parameters | Pjotr Prins |
2016-09-25 | Make sure MAPPING_PATH exists | Pjotr Prins |
2016-09-25 | Settings: enforce MAPPING_PATH only when running plink_gemma | Pjotr Prins |
2016-09-25 | I was getting below error with the small database. This commit, at least, does...not assume the item exists.
ERROR:wqflask:Exception on /marker_regression [POST]
Traceback (most recent call last):
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1817, in wsgi_app
response = self.full_dispatch_request()
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1477, in full_dispatch_request
rv = self.handle_user_exception(e)
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1381, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1475, in full_dispatch_request
rv = self.dispatch_request()
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1461, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "/export2/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/views.py", line 460, in marker_regression_page
template_vars = marker_regression.MarkerRegression(start_vars, temp_uuid)
File "/export2/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/marker_regression/marker_regression.py", line 74, in __init__
value = start_vars['value:' + sample]
KeyError: 'value:BXD80'
| Pjotr Prins |
2016-09-25 | tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2 | Pjotr Prins |
2016-09-13 | Save Image now works for Network Graph and downloads current graph as a png | zsloan |
2016-09-13 | Fixed the path for the json file in gen_select_dataset.py since it was wrong ......Added "Reset" option to network graph that returns all the nodes/edges
Made the visualization options area in the network graph a little wider
| zsloan |
2016-09-13 | Run scripts from ./wqflask - just like the webserver | Pjotr Prins |
2016-09-10 | Comment | Pjotr Prins |
2016-09-10 | Support for running maintenance scripts so they can pick up all webserver set......Run with
./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
| Pjotr Prins |
2016-09-10 | Merge branch 'development' of github.com:genenetwork/genenetwork2 into zsloan | Pjotr Prins |
2016-09-09 | Added a couple options for network graph - Focus Trait, Layout, and a correla......Changed/added a couple node/edge attributes for network graph
Updated dataset menu structure json file to include the human RETINA data set
Added css file for network graph page (specifically to make the appearance of the options resemble the RETINA website's)
| zsloan |