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2015-03-01Add warning to running lmm.py from the command linePjotr Prins
2015-02-28Started adaptations for introducing multi-core versionPjotr Prins
2015-02-20Splitting out handlersPjotr Prins
2015-02-20Moved pylmm scripts that are not used by GN2Pjotr Prins
2015-02-20Remove empty dirPjotr Prins
2015-02-20Split out behaviour for calling lmm from GN2 or (testing) CLIPjotr Prins
2015-02-11Added pop-up for empty searchesZachary Sloan
Replaced pyLMM code with one version of Pyotr's updated faster code Began fixing search to work for combined searches Made login screen look better and fixed for empty fields
2015-01-30Fixed several bugsZachary Sloan
Added legend to bar chart color by trait function Added scatterplot matrix figure Fixed database timeout problem
2014-12-29Made a bunch of cosmetic changes to various pages and fixed a couple searchesZachary Sloan
2014-12-12Added a additive effect column to search result and collection tablesZachary Sloan
Fixed the header so that it looks fine when resizing
2014-12-11Fixed some weirdness with the navbar and jumbotron and aligned everythingZachary Sloan
to the left
2014-12-04Added some pages for anonymous collectionsZachary Sloan
2014-12-04Committing changes to css that change header colorZachary Sloan
2014-12-01Merge /home/lei/geneZachary Sloan
2014-12-01Changed header appearancesZachary Sloan
Partially implemented PCA feature to correlation matrix page
2014-12-01Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2014-11-17Just more changes converting to bootstrap 3Zachary Sloan
2014-11-06Upgraded to bootstrap 3 and updated a lot of html to reflect thisZachary Sloan
2014-11-05Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2014-11-04Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2014-10-29Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2014-10-29Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2014-10-29Merge /home/gn2/geneLei Yan
2014-10-24Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2014-10-24Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2014-10-17Merge /home/zas1024/geneZachary Sloan
2014-10-17Added reference, policies, and links pagesZachary Sloan
Improved the appearance of the header menu and "title bar"
2014-10-09Merge /home/zas1024/geneZachary Sloan
2014-10-09Added config fileZachary Sloan
2014-10-09Fixed error with loading the trait page for phenotype traitsZachary Sloan
2014-10-02Fixed an error when there's no locus for mRNA expression traitsZachary Sloan
2014-09-29Found the problem that was causing several collections functions to not workZachary Sloan
and fixed it
2014-09-22Adding the port as a parameter to runserver; this should just be temporary untilZachary Sloan
I figure out how to get it to read the port from the config file instead Using runserver.py instead of secure_server.py because of an error with the latter that I haven't figured out how to fix yet Improved the appearance of several of the tables
2014-08-28Added a validation that warns the user of the number of permutations forZachary Sloan
pyLMM is more than 20 (due to speed) Changed the port in the flask settings to 5002 due to adding the new production server branch
2014-08-25Merge /home/lei/geneZachary Sloan
2014-08-25Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2014-08-25Merge /home/lei/geneZachary Sloan
2014-08-25Added permutations to pyLMMZachary Sloan
2014-08-21Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2014-08-21Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2014-08-21Added the option to display mapping results as either an interval mappingZachary Sloan
or manhattan plot Fixed a few minor bugs
2014-08-15Permutations now work with rqtlZachary Sloan
2014-08-12Fixed the scrollable data tables for the show trait pageZachary Sloan
Added the option to display the rqtl results (and soon other mapping results) as either a manhattan plot or "interval map" style curve chart Removed a couple unnecessary javascript imports Changed the function in helper_functions.py that creates the trait and dataset objects, making it to where the trait object also gets qtl info Fixed color by trait after it was broken by the "scatterplot matrix" function
2014-08-04Fixed another minor issue with the heatmap where the original curve wouldn't ↵Zachary Sloan
be removed
2014-08-04Fixed a problem with the heatmap after moving reorgLodData function to ↵Zachary Sloan
panelutils.js Got rqtl working with converted BXD genofile and also got composite mapping working
2014-07-25Got the heatmap/lodchart combo workingZachary Sloan
Started working on getting rqtl working as another mapping method
2014-07-21Fixed issue where sample values were ordered on the trait pageZachary Sloan
2014-07-21Heatmap is now working (using Karl's qtlcharts code), but still needZachary Sloan
to figure out the issue with the color range
2014-07-21Merge /home/lei/geneZachary Sloan
2014-07-18Forgot to add the heatmap __init__.py file in the last commitZachary Sloan
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