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2015-05-26Merge pull request #58 from lomereiter/ppzsloan
Use NVD3 for bar chart and probability plot
2015-05-26fix terminologyArtem Tarasov
2015-05-26use NVD3 for bar chartsArtem Tarasov
added informative tooltips and error bars
2015-05-23pp group selectionArtem Tarasov
2015-05-23fix group selection in blocking by indexArtem Tarasov
2015-05-23Fix trait groupingArtem Tarasov
2015-05-23new probability plot (using NVD3 library)Artem Tarasov
* z scores are computed on the client side (using jStat library) * added Shapiro-Wilk test results
2015-05-22Fixed issue where correlation didn't work for human traits (and probably ↵zsloan
some others)
2015-05-21Changed the digits for additive effect and megabases in the search results tablezsloan
2015-05-20Merge pull request #53 from lomereiter/bar_chart_improvementszsloan
Bar chart improvements
2015-05-20revert database.py setupArtem Tarasov
2015-05-20bar charts polishedArtem Tarasov
* fixed bar chart width (two bars were invisible) * disabled basic stats update effects, if they are not visible * fix: unchecked samples were shown in charts (because attr('checked') was used instead of prop('checked')) * bar chart gets redrawn after checkbox changes * edit_data_change is also called when clicking buttons from the 'Block samples' panel * better bar chart transitions (use sample name as d3 key function)
2015-05-19Fixed an issue causing position search to not work in a combined search.zsloan
2015-05-19Fixed an issue that caused combined search to not workzsloan
2015-05-20improved legendArtem Tarasov
Now the legend is always positioned on top, so that no overlapping with the plot occurs and it's always visible. The legend is now composed of spans, not an SVG anymore. Also increased the legend font size to 20px.
2015-05-19Regular LRS searches and p-value searches now work.zsloan
2015-05-18fix attribute coloringArtem Tarasov
also I found out that there are two legends shown simultaneously, but one is suitable only for discrete values, and the other for continuous; now only the suitable one is shown
2015-05-18Merge branch 'upstream' of github.com:lomereiter/genenetwork2 into issue28Artem Tarasov
2015-05-18fix broken trait pageArtem Tarasov
2015-05-15Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2015-05-15Position search now works for mRNA assay and genotype data setszsloan
2015-05-15reduce number of queriesArtem Tarasov
2015-05-15wipArtem Tarasov
2015-05-13Fixed issue where you could change the Make Default button's textzsloan
2015-05-13Fixed sorting on the trait page so that x values always appear at the bottomzsloan
2015-05-13Improved sorting for columns with N/A or missing valueszsloan
2015-05-13Merge pull request #39 from pjotrp/masterzsloan
Refactoring finding tools such as pylmm
2015-05-13comment out sql query loggingArtem Tarasov
2015-05-13combine three similar queries into oneArtem Tarasov
2015-05-13replace multiple tissue queries with a single oneArtem Tarasov
2015-05-13cache datasets for each groupArtem Tarasov
2015-05-12Add info to warningpjotrp
2015-05-12Remove app linepjotrp
2015-05-12More elaborate handling of finding pylmmPjotr Prins
2015-05-12Move path search into tools.pypjotrp
2015-05-12Resolved conflict before commitzsloan
2015-05-12Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2015-05-12Just removed some code that wasn't being usedzsloan
2015-05-12Merge pull request #20 from lomereiter/issue11zsloan
Fixes #11 (buttons on collection page)
2015-05-12Fix #35Artem Tarasov
* 'aliases' and 'location' are shown only where relevant * descriptions for phenotype datasets are provided at the top
2015-05-11Show PYLMM_PATH on errorPjotr Prins
2015-05-11Moved chunksPjotr Prins
2015-05-11More pylmm dependencies disabledpjotrp
2015-05-11Remove outdated codepjotrp
2015-05-11Moving pylmm out of the treepjotrp
2015-05-11pylmm has moved out of the GN2 source tree to ↵pjotrp
https://github.com/genenetwork/pylmm_gn2
2015-05-11Fixed gen_select_dataset so that it does not include Phenotype andzsloan
Genotype groups when the corresponding data sets do not exist Interval Mapping no longer shows up for human traits Fixed the appearance of the mirror links on the main page
2015-05-08Merge github.com:genenetwork/genenetwork2zsloan
2015-05-08Committing before pulling latest changes/fixeszsloan
2015-05-08updating histogram on values' change (#28)Artem Tarasov