| Age | Commit message (Expand) | Author |
|---|
| 2019-05-06 | Removed some unused imports of htmlgen...Fixed a bug that sometimes occurred in search results
Changed order of items on index page
| zsloan |
| 2019-04-26 | Issue where GEMMA LOCO mapping didn't work when samples were edited out shoul... | zsloan |
| 2019-04-26 | Fixed issue where changed smaple values didn't show up in haplotype analyst r... | zsloan |
| 2019-04-18 | Fixed issue that caused removed strains to still appear in the haplotype anal... | zsloan |
| 2019-04-12 | Fixed PDF links in reference to point to the PDFs in GN1 | zsloan |
| 2019-04-12 | - Improved Interval Analyst table appearance in mapping results...- Made the text on the "Forgot Password" page more simple and less cluttered
- Added line to index page about RANGE search function
- Fixed bar chart on trait page so that it sets the bottom margin depending upon the longest sample name length
| zsloan |
| 2019-04-10 | Removed option to upload file for submitting traits, since it doesn't current... | zsloan |
| 2019-04-10 | Fixed issue that was causing submitted temp traits to not work | zsloan |
| 2019-04-05 | Fixed issue that caused error for phenotype searches (kind of a quick fix and... | zsloan |
| 2019-04-05 | Fixed issue where Max LRS column displayed the mean in global search results | zsloan |
| 2019-04-04 | Fixed issue where dataset_menu_structure.json included some groups with no vi... | zsloan |
| 2019-04-03 | Fixed an issue that caused global phenotype search to often not work and cert... | zsloan |
| 2019-04-03 | Fixed issue where strains could be added twice in the SNP browser, causing so... | zsloan |
| 2019-04-02 | Fixed issue where non-GEMMA mapping would throw an error because it would sti... | zsloan |
| 2019-03-29 | Fixed issue that caused PCA results to be different in GN2 than in GN1; one r... | zsloan |
| 2019-03-29 | Updated UCSC Verify link-out from hg19 to hg38 for humans | zsloan |
| 2019-03-28 | Added link to GN2 document github wiki to index page | zsloan |
| 2019-03-28 | Possibly fixed issue where PCA traits didn't calculate for certain sets of tr... | zsloan |
| 2019-03-27 | Changed gen_select_dataset.py to be able to show multiple datasets under the ......Fixed issue where full description was given for some unpublished traits
Fixed code related to editing certain pages (like news) with CKEditor, but it still won't work until the CKEditor library is included in GUIX or something
| zsloan |
| 2019-03-25 | - Added SVG export to basic stats figures...- Fixed issues where some stats figures (mainly box and violin plots) didn't update correctly when sample values were changes
- Fixed issue with some temp traits if user wasn't logged in
- Fixed issue where traits couldn't be added to a collection from the correlation results page
| zsloan |
| 2019-03-19 | Added option to add PCA traits to collection from correlation matrix page | zsloan |
| 2019-03-18 | - Added PCA traits to correlation matrix. You can't change their names yet or......but you can click them and access them from the trait page. I'll add the option to access them from the corr matrix page as well,
but adding the option to change their names might be trickier since they're currently used as their Redis keys. I need some better
way of passing the Redis key around so it can be stored in collections, but this is tricky without changing the structure in ElasticSearch
- Fixed the way temp traits work so you can use them with various functions, like mapping, correlations, network graph, etc
- Fixed some appearance issue where the network graph options were too wide if a trait name was too long
| zsloan |
| 2019-03-13 | Zooming into chromosome or remapping with GEMMA is now very fast, since it st......Added option to search for terms in quotes, searching for all the contents within the quotes
Added link to R/qtl documentation when user is in the R/qtl mapping tab
| zsloan |
| 2019-03-11 | Changed header style, because the jumbotrons previously used didn't look that... | zsloan |
| 2019-03-11 | Added default empty collection when user is logged in and attempts to add tra......Fixed issue with displaying cofactor selection tables for scatterplot
Removed limit on text length for collection trait fields (dataset name and description)
| zsloan |
| 2019-03-07 | Changed the way covariates are displayed when selected for mapping...Made the outlier notification appear for all mapping methods
Removed some misleading text saying "Block samples" from the Transform and Filter Data section
| zsloan |
| 2019-03-07 | Made violin plots for different groups/sample-sets different colors and match... | zsloan |
| 2019-03-07 | Fixed issue where pressing enter in the search page text area would go to a n......Also removed some pointless wrapper from dataset_select_menu_orig.js that was left over from being converted from coffeescript (need to do this with other files also)
| zsloan |
| 2019-03-07 | Fixed issue where correlation results containing NaN results sorted incorrectly...Set default permutations for R/qtl to 200
| zsloan |
| 2019-03-06 | Cofactor option for correlation scatterplot was broken; it should be fixed now...Added title to basic stats table and made link for Interquartile Range more obvious
Removed pointless "Delete Collection" button from correlation results page
| zsloan |
| 2019-03-05 | Made R/qtl metho/model names better and added some javascript to disable wron... | zsloan |
| 2019-03-04 | Fixed excel export to show all columns...Fixed stats table to calculate Range and Interquartile Range correctly, and only show Range (fold) for appropriate traits
| zsloan |
| 2019-03-04 | - Added z-score transformation...- Added text indicating which transformation has been applied
| zsloan |
| 2019-03-01 | Added alternating point colors for manhattan plots | zsloan |
| 2019-03-01 | Changed loading page to work for any feature, instead of having to make a sep......Fixed some wrong text on heatmap page
| zsloan |
| 2019-03-01 | Added more information to the top-right corner of the mapping results...Fixed sorting issues on correlation page
| zsloan |
| 2019-02-27 | Added loading page for correlation...Added a better error page for mapping if no results are returned (which generally implied an error occurred during the running of GEMMA)
Fixed some issues with tables, like them sorting incorrectly or showing the wrong number of digits
| zsloan |
| 2019-02-22 | Fixed some appearance issues with several tables...Fixed issue where cofactor selection screens were broken
Changed case attributes to be applied across groups, though need to discuss this with Rob since it shouldn't always be done this way
Added new inversion transformation
| zsloan |
| 2019-02-18 | Updated installation instructions and SERVER_PORT for single flask server | Pjotr Prins |
| 2019-02-15 | Fixed error caused by change to N values in database (now takes strings inste......Fixed error that caused N to show up as "null" in the trait sample table instead of "x"
| zsloan |
| 2019-02-14 | Fixed minor bug with updating stats figures when sample values changed | zsloan |
| 2019-02-14 | Changed trait page tables to load JSON...Also fixed such that sorting works with user-updated values
| zsloan |
| 2019-02-13 | Removed pylmm references and related functions | Pjotr Prins |
| 2019-02-13 | Remove all coffee files | Pjotr Prins |
| 2019-02-12 | Added GeneWeaver linkout...Fixed some issues with sorting in various tables
Changed header appearance for some pages
Fixed bug where basic stats table would sometimes be duplicated or show up with empty fields
| zsloan |
| 2019-02-05 | Removed redundant header text from search page to save vertical space | zsloan |
| 2019-02-05 | Fixed issue with getting marker info that affected heatmap and possibly other......Added the collection page features (correlation matrix, network graph, third party link-outs, etc) to the search result and correlation result pages
| zsloan |
| 2019-02-04 | Changed the way the table is drawn for the search pages so that it can show w......Added typeahead to snp_browser (still need to tell it only to use it for rat, though)
Added WebGestalt link to collection page (still need to add it and BNW to other trait list pages)
| zsloan |
| 2019-01-22 | Fixed issue where Haplotype Analyst in mapping results would always show resu......Fixed issue where traits couldn't be added to a collection from the global search results
Made some improvements to the gene global search table
| zsloan |
| 2019-01-17 | Redid gene global search to take JSON data input instead of converting an HTM......Made some changes to make trait page SNPs link point to GN2 SNP Browser, as well as make other links open in new tabs/windows
| zsloan |
