| Age | Commit message (Expand) | Author |
|---|
| 2022-07-08 | Add python for exporting case attributes | zsloan |
| 2022-07-08 | Add JS for exporting case attributes (sample metadata) | zsloan |
| 2022-07-04 | wqflask: Remove DebugToolbarExtension...This functionality, at least how we use it, is already provided
natively in python's pdb. Should someone need this, they can add it
manually.
* wqflask/runserver.py (app_config): Remove "flask_debugtoolbar"
import and instantiation.
* wqflask/utility/startup_config.py (app_config): Ditto.
| BonfaceKilz |
| 2022-07-04 | wqflask: use the raw user string if value is non-existent in redis...* wqflask/wqflask/metadata_edits.py (_get_diffs): If a user---whose
value is extracted from Redis and encoded in the file name---doesn't
exist in Redis, use the raw string extracted from the file.
| BonfaceKilz |
| 2022-07-04 | wqflask: Use a map over a tuple when fetching case-attributes...* wqflask/wqflask/metadata_edits.py (update_phenotype): Replace old
"get_case_attributes" function call which returned a dict with the new
updated version that returns a tuple.
| BonfaceKilz |
| 2022-06-23 | Fix manual column width change feature to work in create_datatable.js | zsloan |
| 2022-06-23 | Add columnDefs as parameter for setUserColumnDefWidths...Now that the function is in a separate JS file it needs the parameter to
be directly provided
| zsloan |
| 2022-06-23 | Fix JS/CSS imports and include scroller setting in custom table settings | zsloan |
| 2022-06-23 | Change some variables in search_result_page.html to camelCase | zsloan |
| 2022-06-23 | Remove HTML table from collections/view.html and replace with list of...column definitions passed to create_datatable.js
| zsloan |
| 2022-06-23 | Change tableSettings in loadDataTable parameters to customSettings | zsloan |
| 2022-06-23 | Change jsonable in GeneralTrait so that it passes all necessary table...information
| zsloan |
| 2022-06-23 | Convert trait.view to string for conversion to JSON...It's originally a boolean, which causes an error when passed to the JS
code as JSON
| zsloan |
| 2022-06-23 | Change create_datatable.js from CRLF to LF + fix a couple syntax bugs | zsloan |
| 2022-06-23 | Pass table data to collections/view template and create_table.js | zsloan |
| 2022-06-21 | wqflask: views: Delete noisy logging and dead code...- Remove commented out code-blocks
- Remove calls with this pattern:
logger.info("Sending ...")
logger.info(request.url)
Should you want to inspect the local context of an
environment when troubleshooting, set a
breakpoint() and inspect the environment. To view
everything in the local context, use "pp
locals()"; and to view everything in the global
context, use "pp globals()".
| BonfaceKilz |
| 2022-06-20 | Simplify partial correlation method choices...- Have only `Pearson's r` and `Spearman's rho` as the available
choices for the partial correlations.
| Frederick Muriuki Muriithi |
| 2022-06-16 | Change table_functions.js variables to camelCase | zsloan |
| 2022-06-16 | Replace DataTables code in collection view page with call to new create_table.js | zsloan |
| 2022-06-16 | Initial commit for create_datatable.js...This file will contain the generic function for initializing datatables,
that will take the table ID, table data, column definitions, and custom
settings as input (custom settings being additional DataTables settings
or settings differing from the defaults)
| zsloan |
| 2022-06-16 | Include json version of collection trait list, so it can be passed directly t... | zsloan |
| 2022-06-15 | templates: base: Update GN2 footer...* wqflask/wqflask/templates/base: Remove links to non-functioning
mailing list. Remove link to "#genenetwork" channel that isn't currently
owned/moderated.
Co-authored-by: Ethan Willis <elwillis1@gmail.com>
| BonfaceKilz |
| 2022-06-13 | Check chromosome for 'Un' in search results and print N/A in such cases | zsloan |
| 2022-06-13 | Check for chromosome of 'Un' and print location as 'Not available' in such cases | zsloan |
| 2022-06-13 | Increase width threshold for using scroller, to prevent issue with blue lines... | zsloan |
| 2022-06-13 | Limit search result descriptions to 500 characters | zsloan |
| 2022-06-13 | Add |safe to ensure HTML entites are correctly escaped for trait descriptions | zsloan |
| 2022-06-10 | Skip failing integration test...ATM, it's hard to by-pass the authentication
decorators, and as such, skip this test for. This
may be deleted later.
| BonfaceKilz |
| 2022-06-10 | Reverse polarity for gemma additive effects in tests...Fixes broken test. See: #89a7868.
| BonfaceKilz |
| 2022-06-07 | Define gn_server_url before running the drop-down menu JS code | zsloan |
| 2022-06-07 | Make indentation and spacing more consistent for...dataset_select_menu_orig.js
| zsloan |
| 2022-06-07 | Fix issue that caused Submit Trait page drop-down menus to not work...Also removes a bunch of unnecessary console logging
| zsloan |
| 2022-06-01 | Fix the way R/qtl is called in the GN2 REST API | zsloan |
| 2022-06-01 | Remove IDs called 'submit' to prevent forms from breaking...Apparently if a button has an ID called 'submit', trying to submit a
form via JS won't work
| zsloan |
| 2022-05-31 | Check if entered pubmed_id is already associated with a publication, and...set PublishXRef.PublicationId equal to that Id if it exists
| zsloan |
| 2022-05-31 | Reverse polarity for gemma additive effects...This is basically just a quick pseudo-fix to at least get the polarity
right
| zsloan |
| 2022-05-31 | Fix minor bug | Frederick Muriuki Muriithi |
| 2022-05-31 | Fix error rendering...Render the command_id if present in the error report to help with
troubleshooting failures.
| Frederick Muriuki Muriithi |
| 2022-05-27 | Apply python-black on file | BonfaceKilz |
| 2022-05-27 | Don't make a POST if there's a blank form-element | BonfaceKilz |
| 2022-05-27 | Move SQL queries to GN3 | BonfaceKilz |
| 2022-05-27 | Strip data before storing it | BonfaceKilz |
| 2022-05-27 | Make sure the user is logged in when approving data | BonfaceKilz |
| 2022-05-27 | Pass secend arg to cursor.execute as a tuple | BonfaceKilz |
| 2022-05-27 | Add sensible styling to "reject"/"approve" buttons | BonfaceKilz |
| 2022-05-27 | Align "Add New" button with the actions column | BonfaceKilz |
| 2022-05-27 | Add js logic to POST to "approval" endpoint | BonfaceKilz |
| 2022-05-27 | Assign the correct value to key | BonfaceKilz |
| 2022-05-27 | Display description diff-data if it exists | BonfaceKilz |
| 2022-05-27 | Ony show the title if there are any changes to be approved/rejected | BonfaceKilz |
