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AgeCommit message (Expand)Author
2023-02-13Initially disable mapping compute buttons + change their text to Loadingzsloan
2023-02-10oauth2: data: Start on UI for linking data to groups.Frederick Muriuki Muriithi
2023-02-09oauth2: groups: Reject join requests....Add handler for rejecting user join requests. Fix a number of minor UI bugs. Frederick Muriuki Muriithi
2023-02-09oauth2: fix variable name. Fetch join requests if there's no group.Frederick Muriuki Muriithi
2023-02-09oauth2: Remove create/join options with active request...If a user has an active join request, then do not provide them with the option to create a new group, or even to request to join another group. Frederick Muriuki Muriithi
2023-02-09oauth2: reorganise the endpoints.Frederick Muriuki Muriithi
2023-02-08oauth2: groups: Handle join requests.Frederick Muriuki Muriithi
2023-02-07oauth2: groups: Enable user to request to be added to group.Frederick Muriuki Muriithi
2023-02-06oauth2: resources: View resource. Handle creation error/success...* Handle the resource creation success or error in a better way than simply dropping the user to a plaintext/json results page. * Enable viewing a particular resource's details. Frederick Muriuki Muriithi
2023-02-03oauth2: resource: implement incomplete resource creation flowFrederick Muriuki Muriithi
2023-02-02oauth2: Update endpoints to the API server...The endpoints to the GN3 API server changed in a recent update, necessitating this commit to update the endpoints. Frederick Muriuki Muriithi
2023-01-31oauth2: Display members in groups page. Rework UI.Frederick Muriuki Muriithi
2023-01-31oauth2: Fix bugs with group creation. Rename functions....Fix some bugs with group creation, mainly correctiong the urls. Rename importable functions to remove the double underscores. Frederick Muriuki Muriithi
2023-01-31oauth2: remove obsolete function.Frederick Muriuki Muriithi
2023-01-30oauth2: update urlFrederick Muriuki Muriithi
2023-01-30oauth2: fix errors.Frederick Muriuki Muriithi
2023-01-30oauth2: Fix missing imports and update URLsFrederick Muriuki Muriithi
2023-01-30oauth2: Fix missing import.Frederick Muriuki Muriithi
2023-01-30 oauth2: Add placeholder endpoints and UI elements...Add some endpoints and UI elements to act as placeholders for yet to be implemented functionality. Frederick Muriuki Muriithi
2023-01-30oauth2: Display user's group information.Frederick Muriuki Muriithi
2023-01-30oauth2: split out code into separate modules...To ease development and maintenance, split the code into separate modules, nesting the blueprints for a more modular feel. Frederick Muriuki Muriithi
2023-01-28oauth2: List the user roles. View a particular role's details.Frederick Muriuki Muriithi
2023-01-26oauth2: UI: Rework user dashboard UI...Separate the roles, resources and group information from the overview page. Frederick Muriuki Muriithi
2023-01-24scripts: Provide help info for script.Frederick Muriuki Muriithi
2023-01-24correlations: Escape strings for html...Improves upon commit 63aff5ca22cfb5caaa38ac1d737afa48fc8dbf02 Frederick Muriuki Muriithi
2023-01-23oauth2: create group...Enable creation of a new group. Frederick Muriuki Muriithi
2023-01-23oauth2: Retain email input, and "next uri" on error...Retain the "next uri" and the email the user had input in the case of an error, so that the user has the chance to correct their input, and still get to the uri they originally intended to (on success). Frederick Muriuki Muriithi
2023-01-21oauth2: Cleanup fetching of roles and groups. Update template.Frederick Muriuki Muriithi
2023-01-20oauth2: Add user-profile template and dummy endpoints...* wqflask/wqflask/oauth2/routes.py: add some dummy endpoints to be fleshed out * wqflask/wqflask/templates/oauth2/view-user.html: Add missing template for the /user-profile endpoint Frederick Muriuki Muriithi
2023-01-20oauth2: Revoke token on logout...If a user logs out of the session, and their token is not revoked, if their token were to leak somehow, then an attacker could use it before it expired. Explicit revocation of the token helps avoid that. Frederick Muriuki Muriithi
2023-01-19Replace angle brackets in trait descriptions for correlation results, since p...zsloan
2023-01-19oauth2: Implement user registration.Frederick Muriuki Muriithi
2023-01-19Feature/toggle switch caching (#762)...* add optional use cache checkbox * add check for use_cacheAlexander Kabui
2023-01-12Add BXD-NIA-AD to list of BXD_GROUP_EXCEPTIONS (so the correct options show u...zsloan
2023-01-12Revert "bug: use stderr in case of job errors"...This reverts commit 4666392bbc34e693f21895ccb62abb816ff95874. Frederick Muriuki Muriithi
2023-01-12mechanical-rob: use new file(s) for correlation correctness...* test/requests/correlation_results_text_files/BXD_10710_vs_BXDPublish.csv new sample file for testing. * test/requests/correlation_tests.py: update test code to use new sample files * wqflask/wqflask/correlation/show_corr_results.py: Fix minor issues exposed by tests. Frederick Muriuki Muriithi
2023-01-12bug: use stderr in case of job errorsFrederick Muriuki Muriithi
2023-01-09Add Show/Hide Columns to collections/viewzsloan
2023-01-09Add back option to search on trait page table...This was mistakenly removed when the table code was refactored a while back zsloan
2023-01-05Turn on homology track by defaultzsloan
2023-01-04auth: Add `/user-profile` endpoint...Display some details for the currently logged in user at the `/user-profile` endpoint. Frederick Muriuki Muriithi
2022-12-29auth: Redirect on login and cleanup...* wqflask/wqflask/oauth2/routes.py: remove unused imports. Add placeholder endpoint "/register-client" * wqflask/wqflask/templates/oauth2/login.html: enable redirect to specific endpoints Frederick Muriuki Muriithi
2022-12-29auth: Provide decorator to limit access to routes...Define the new `oauth2_required` decorator that checks for the existence and validity of a token before allowing access to the given endpoint. Move the `user_logged_in` check to the `checks.py` module. * wqflask/wqflask/oauth2/checks.py: new file * wqflask/wqflask/oauth2/routes.py: import new decorator Frederick Muriuki Muriithi
2022-12-29Implement "login" via OAuth2Frederick Muriuki Muriithi
2022-12-23Remove try/except around mapping, because it makes it hard to see proper erro...zsloan
2022-12-23No tracking: remove revolvermapsPjotr Prins
2022-12-21Remove unnecessary if statement from drawHomologyBandzsloan
2022-12-21Fix logic for filtering homology datazsloan
2022-12-21Make homology track display directional arrows based on query strandzsloan
2022-12-21Fix homology source file path...Fix syntax error in multiline if statement zsloan