genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2020-11-13	Switched to using f-strings instead of the older method of string	zsloan
	formatting
2020-11-13	Switched to using boolean casting to check if various trait attributes	zsloan
	exist
2020-11-13	- Added Show/Hide Columns options and included the trait_list.css file	zsloan
	which including styling for said options - Changed some column widths to avoid text wrapping
2020-11-13	Added some css to trait_list.css restyling the "show/hide column"	zsloan
	buttons when they're active. Not really pleased with the result, but styling a button to look depressed is a pain
2020-11-13	Changed some if/else statements to just initializing the variables + the	zsloan
	if statement and fixed "lrs_location" to "location" for target genotypes
2020-11-13	Added cdn imports for fontawesome to correlation page and changed	zsloan
	superscript i's to fontawesome icons for the glossary links in column headers
2020-11-13	Replaced superscript i's for glossary links in search result table	zsloan
	headers with fontawesome icons
2020-11-12	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵	zsloan
	feature/corr_table_changes
2020-11-11	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	zsloan

2020-11-11	Added Bonface to the footer	zsloan

2020-11-11	Changed some column widths and removed the width for description so it can ↵	zsloan
	vary with page width
2020-11-11	- Fixed an issue causing the phenotype abbreviation to not be displayed ↵	zsloan
	properly in correlation results - Set default description to N/A when there's no trait description for phenotype traits
2020-11-11	Switched checking if a trait is confidential to checking if it has a pubmed ↵	zsloan
	ID for the purposes of showing pre-publication abbreviation/description
2020-11-11	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵	BonfaceKilz
	feature/add-glossary-page
2020-11-11	Update image width	BonfaceKilz

2020-11-11	Add basic markdown styling	BonfaceKilz
	* wqflask/wqflask/static/new/css/markdown.css: New file. * wqflask/wqflask/templates/glossary.html: add markdown id to markdown container.
2020-11-10	Changed logic for creating temp trait SampleList to account for both traits ↵	zsloan
	encoded as bytes and traits encoded as strings, since temp traits created before and after the Python 3 switchover will have different encoding
2020-11-10	* wqflask/wqflask/correlation/show_corr_results.py - Changed some of the ↵	zsloan
	parameters sent to the correlation table * wqflask/wqflask/templates_correlation_page.html - Fixed some column defs and removed unused table configuration code
2020-11-10	Fixed issue where strain values in bytes needed to be decoded when loading a ↵	zsloan
	Temp trait
2020-11-10	Changed "BXD-Harvested" to "BXD-Longevity" since that group was renamed and ↵	zsloan
	using the wrong name was causing correlations to not work.
2020-11-10	Added CSS file for all pages that include a table of traits	zsloan

2020-11-10	Add missing links and some markdown formatting(underline, bold)	BonfaceKilz
	* wqflask/wqflask/static/markdown/glossary.md: Update file.
2020-11-06	Removed the page selection from the top of the table because it created an ↵	zsloan
	awkward gap between the column show/hide buttons and the table, and this table will be changed to use Scroller instead of paging soon regardless
2020-11-06	Changed the show/hide column buttons to use DataTables API + a few other ↵	zsloan
	changes (for some reason none of my changes could be pushed from one of my local branches to origin/testing, so they're combined in this commit) - Fixed a couple column header glossary links to point to GN1 - Added trait_list.css for styling a couple elements common to similar pages (like correlations or view collection)
2020-11-06	Added min-width for the divs containing the analysis tools and table ↵	zsloan
	options, since they would look weird if the window shrunk below a certain width Also made some indentation more consistent
2020-11-06	Added new css file for pages that have trait list tables (not sure what else ↵	zsloan
	to call them, but pages like search results, view collection, and correlation results)
2020-11-06	Increased the min-width for the show_trait page container div for all the ↵	zsloan
	accordion sections, since previously it could get too narrow and cause text to extend beyong the borders of each accordion area
2020-11-06	After I changed some class names in the trait page to use - instead of _ (to ↵	zsloan
	keep naming consistent) I forgot to change the references in show_trait_mapping_tools.js (which broke the functionality of clicking a tab doing mapping)
2020-11-05	Converted correlation table for ProbeSet target datasets to use the JSON ↵	zsloan
	input and removed the unused table html
2020-11-05	Added some additional necessary fields to generate_corr_json in ↵	zsloan
	show_corr_results.py
2020-11-05	Removed html from generate_corr_json since that will be done by the column ↵	zsloan
	definitions after passing the data to DataTables as JSON
2020-11-05	Imported Scroller and used it with correlation page table	zsloan

2020-11-04	Changed numeric-html sorting for the Tissue/Lit r columns to ↵	zsloan
	natural-minus-na so it deals with the "--" values * wqflask/wqflask/templates/correlation_page.html - Replaced numeric-html sorting with natural-minus-na for the lit/tissue r columns
2020-11-04	Use new glossary link from glossary_blueprint in html templates	BonfaceKilz

2020-11-04	Add missing image	BonfaceKilz

2020-11-04	Add link markers to elements which are referenced from elsewhere	BonfaceKilz

2020-11-04	Update test_markdown_routes	BonfaceKilz
	* wqflask/tests/unit/wqflask/test_markdown_routes.py (test_render_markdown_when_fetching_locally): Fix failing test.
2020-11-04	Add an edit link button to glossary page	BonfaceKilz

2020-11-04	Wrap rendered content in div container	BonfaceKilz

2020-11-04	Update glossary markdown file	BonfaceKilz

2020-11-04	Merge pull request #475 from Alexanderlacuna/test-showtrait	BonfaceKilz
	Add more tests for show trait module
2020-11-04	correct a typo	Alexanderlacuna

2020-11-04	remove extra whitespace	Alexanderlacuna

2020-11-04	remove whitespace in line 119-120	Alexanderlacuna

2020-11-04	remove whitespace	Alexanderlacuna

2020-11-04	remove whitespace and assertIs	Alexanderlacuna

2020-11-03	Merge pull request #479 from zsloan/bug/haplotype_analyst_error_fix	zsloan
	Bug/haplotype analyst error fix
2020-11-03	Changed the syntax for the "sort" function in the docstring of GeneralObject ↵	zsloan
	to be compatible with Python 3 syntax * wqflask/base/GeneralObject.py - edited docstring to be correct for Python 3
2020-11-03	Fixed a sort used when doing the haplotype analysis to be compatible with ↵	zsloan
	Python 3 * wqflask/wqflask/marker_regression/display_mapping_results.py - The arguments for sort are different in Python 3, so it was changed to be compatible
2020-11-03	Fix false-positive tests	BonfaceKilz
	* wqflask/tests/unit/wqflask/test_markdown_routes.py: (MockRequests404): Pass self in all properties. (MockRequests200): Ditto. (test_render_markdown): Rename to test_render_markdown_when_fetching_locally. (test_render_markdown_when_fetching_remotely): New test.