Age | Commit message (Expand) | Author |
2016-04-20 | Cleaning code, adding comments | DannyArends |
2016-04-20 | Adding the lineplot image to the output | DannyArends |
2016-04-20 | Adding code to do initial CTL mapping (working on the BXD) | DannyArends |
2016-04-20 | Parsing the names of the individuals, and coding H as -999 | DannyArends |
2016-04-20 | Minor changes to the CTL setup template | DannyArends |
2016-04-20 | Using the geno parser to get/parse the genotypes for the dataset | DannyArends |
2016-04-20 | Adding the geno file parser from Zach | DannyArends |
2016-04-20 | Creating the analysis object and passing results to the results template | DannyArends |
2016-04-20 | [PATCH 082/100] Testing passing information between the templates | DannyArends |
2016-04-20 | Loading the library and mapping the scan function | DannyArends |
2016-04-20 | Connecting the CTL analysis to the collection overview, by adding a button | DannyArends |
2016-04-20 | Adding initial file to perform CTL analysis | DannyArends |
2016-04-20 | [PATCH 078/100] Adding empty templates for CTL in GN2 | DannyArends |
2016-04-20 | Cleaning up the WGCNA parameter input template | DannyArends |
2016-04-20 | [PATCH 061/100] Put R/qtl .cross file in TMPDIR | Pjotr Prins |
2016-04-20 | Show error when GENODIR is missing | Pjotr Prins |
2016-04-20 | Remove dbdoc | pjotrp |
2016-04-20 | Removed symlinks | pjotrp |
2016-04-20 | r-wgcna: Fix paths | pjotrp |
2016-04-20 | More hard-coded | pjotrp |
2016-04-20 | [PATCH 050/100] Using out-of-tree storage. Added comments for plink,... gemma.
| Pjotr Prins |
2016-04-20 | [PATCH 049/100] SNP_PATH: removal | Pjotr Prins |
2016-04-20 | [PATCH 047/100] This commit moves the image generation dir *outside* the git ... | Pjotr Prins |
2016-04-20 | external program should fail on return value not zero | pjotrp |
2016-04-20 | [PATCH 045/100] Reverted on previous changes. With a corrected... python2-piddle module the thing works. Turns out that the version we are
using is not the same as the public one. Despite the same version number.
| Pjotr Prins |
2016-04-20 | Minor fixes | pjotrp |
2016-04-20 | [PATCH 042/100] Sanitizing locations | Pjotr Prins |
2016-04-20 | [PATCH 041/100] Fixes for running tools | Pjotr Prins |
2016-04-20 | When a sample does not exist we should not set sample_data to None. Better to... | pjotrp |
2016-04-20 | -a...[PATCH 039/100] Removing commented code
| Pjotr Prins |
2016-04-20 | -a...[PATCH 038/100] Fix compile errors
| Pjotr Prins |
2016-04-20 | [PATCH 037/100] WebQtlConfig: sanitizing naming and used vars | Pjotr Prins |
2016-04-20 | Settled on the _COMMAND syntax over _RUN | pjotrp |
2016-04-20 | With missing samples to not add them to the result set | pjotrp |
2016-04-20 | This threw an error when sample is missing in the DB....Let sample pass without data if the sample/genotype does not exist in
the database.
| pjotrp |
2016-04-20 | [PATCH 033/100] Refactored file searching | Pjotr Prins |
2016-04-20 | [PATCH 032/100] file locating: error checking is built-in | Pjotr Prins |
2016-04-20 | Fine tuning file locating | pjotrp |
2016-04-20 | tools.py: add function locate_without_error | pjotrp |
2016-04-20 | [PATCH 027/100] Introduce tools.locate | Pjotr Prins |
2016-04-20 | [PATCH 026/100] Introducing cached values PYLMM_COMMAND,... GEMMA_COMMAND, PLINK_COMMAND and TEMPDIR
| Pjotr Prins |
2016-04-20 | Introducing TEMPDIR | pjotrp |
2016-04-20 | [PATCH 024/100] Sanitizing file handling | Pjotr Prins |
2016-04-20 | [PATCH 023/100] WIP fixing all paths | Pjotr Prins |
2016-04-20 | Remover dependency to logger_tree (may reintroduce later) | pjotrp |
2016-04-20 | [PATCH 018/100] Find external tools: refactored code to work with GNU Guix | Pjotr Prins |
2016-04-20 | Removed import htmlgen as is not used (apparently) | pjotrp |
2016-04-19 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development...Conflicts:
wqflask/base/trait.py
| zsloan |
2016-04-18 | Additive effect lines are now separated by chromosome (like the qtl line in t......Fixed order of stats table in trait page
Removed the qtl results table from chromosome view; will add the Interval Analyst output later
| zsloan |
2016-04-14 | Fixed issue where qtl lines in interval mapping wouldn't connect between chro......Added text explaining what * indicates in the mapping options menu
Removed ranges (log2 and fold) from stats table for phenotype traits
| zsloan |