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2017-03-05Settings: make sure paths exist when starting serverPjotr Prins
2017-03-05Merge auwerxPjotr Prins
2017-03-05Merge branch 'master' of github.com:zsloan/genenetwork2 into zsloanPjotr Prins
2017-03-04Creating the EPheWas object in pythonDannyArends
2017-03-04Starting integration of the ePheWas toolDannyArends
2017-03-04Minor update to the commentsDannyArends
2017-02-17Polishing, adding the help at the side, PheWAS integrated fully (untill I can...DannyArends
2017-02-17Cleaning up the templates, adding the LOC adjusted columnDannyArends
2017-02-17Connecting p.adjust parameters, and updating the region size parameterDannyArends
2017-02-17Template connects to R, userinput handled/passed towards R from the python codeDannyArends
2017-02-16Updated templates to show a table for GN2DannyArends
2017-02-16Phewas output table code in pythonDannyArends
2017-02-10Working PheWAS in GN2, only for chromosome 1 on 25 megabases, but it's a startDannyArends
2017-02-09Fixed issue where I forgot to add GeneticType to the query_for_group query fo...zsloan
2017-02-09Changed second column header to 'Value' when there's only one sample groupzsloan
2017-02-09Added genetic_type to DatasetGroup object to differentiate between which grou...zsloan
2017-02-09Initial code that allows us to run the PheWAS tool, using pre-computed data, ...DannyArends
2017-02-08Changed the way .fam files are written/read, which fixes the issue with GEMMA...zsloan
2017-02-08Adding the analysis structure of the PheWAS analysis in the python code, it's...DannyArends
2017-02-08Renamed the analysis code files to include the word analysis to not conflict ...DannyArends
2017-02-08Deadly Sin #1 changing the javascript without touching the coffeescript which...DannyArends
2017-02-08Adding routes for all 3 analysis toolsDannyArends
2017-02-08Adding stub display templates for all 3 analysis toolsDannyArends
2017-02-07empty output template to show the results from PheWAS analysisDannyArends
2017-02-07Inital python code to do PheWAS analysis from RDannyArends
2017-02-07Added a new route for the PheWAS resultsDannyArends
2017-02-07Templated html to show the PheWAS analysis input options on the trait pageDannyArends
2017-02-07Adding an initial new trait page for a tabbed pane holding PheWAS, ePheWAS an...DannyArends
2017-02-07Initial empty file, this will hold the PheWAS tools at a later point in timeDannyArends
2017-02-07Adding a new panel to hold the upcomming PheWAS toolsDannyArends
2017-02-06Mapping results figure now correctly says whether GEMMA was used as mapping m...zsloan
2017-02-06Merge branch 'development' of github.com:zsloan/genenetwork2zsloan
2017-02-06Commented out reference to trait_submission since it's not used yetzsloan
2017-02-06Merge branch 'master' of github.com:zsloan/genenetwork2zsloan
2017-02-06Fixed appearance of several tables (search, mapping results, sample data)zsloan
2017-01-26Merge pull request #1 from genenetwork/testingzsloan
2017-01-26GEMMA now works with CFW data (had to update where it looks for the input fil...zsloan
2017-01-03Fixed appearance of samples tables in show_trait to look like all the other t...zsloan
2016-12-15Merge pull request #234 from zsloan/masterzsloan
2016-12-15Changed table appearancezsloan
2016-12-13Fixed a problem related to the last commit that caused a problem when loading...zsloan
2016-12-12Moved a bunch of functions out of the GeneralTrait class that didn't need to ...zsloan
2016-11-29Fixed loadings plot so it looks like the GN1 figurezsloan
2016-11-21Fixed correlation page so it correctly sorts by the scientific notation for s...zsloan
2016-11-18Fix sql error: (GeneNetwork error: (_mysql_exceptions.OperationalError) (1054...Lei Yan
2016-11-15Fixed issue where sample values of 0 would sometimes be displayed as 'x', whi...zsloan
2016-11-11Fixed error causing correlation matrix page to not work with 2 traits (relate...zsloan
2016-11-11Fixed problem that caused checkboxes to not work with Scroller search results...zsloan
2016-11-08Adding the joss badgeDannyArends
2016-11-07Adding functions addNode and addEdge, to separate out the cytoscape graph cre...DannyArends