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Author
2016-04-28
Changed the defunct GeneRIF URL to a working Wikipedia URL (which
...
also points to the non-working NCBI link)
Pjotr Prins
2016-04-26
Interval mapping: fix font and image path
Pjotr Prins
2016-04-26
Merging with Zach's latest branch
Pjotr Prins
2016-04-25
Interval Analyst table mostly working, just need to work out a few more things
zsloan
2016-04-22
Fixed issue where manhattan plot setting wasn't being carried over to single ...
...
Removed a useless "if 1 == 1" line that was in marker_regression_gn1.py for testing.
zsloan
2016-04-20
Interval Mapping now correctly does interval mapping if Marker Regression isn...
...
Changed "Manhattan Plot" label to "Marker Regr." to accurately reflect what the option does
zsloan
2016-04-20
Added borders to stats table in trait page
zsloan
2016-04-20
Fix typo
Pjotr Prins
2016-04-20
A few fixes to get the webserver running again
Pjotr Prins
2016-04-20
Add file
Pjotr Prins
2016-04-20
trasnform to transform
DannyArends
2016-04-20
Changed the file stem of generated pictures to CTL
DannyArends
2016-04-20
Adding small figures per trait, so that users can see CTL and QTL for each in...
DannyArends
2016-04-20
Adding parameters, and passing them to the CTL algorithm
DannyArends
2016-04-20
Working on the output template of CTL
DannyArends
2016-04-20
Updates to the CTL code adding the significant results to the result object
DannyArends
2016-04-20
Cleaning code, adding comments
DannyArends
2016-04-20
Adding the lineplot image to the output
DannyArends
2016-04-20
Adding code to do initial CTL mapping (working on the BXD)
DannyArends
2016-04-20
Parsing the names of the individuals, and coding H as -999
DannyArends
2016-04-20
Minor changes to the CTL setup template
DannyArends
2016-04-20
Using the geno parser to get/parse the genotypes for the dataset
DannyArends
2016-04-20
Adding the geno file parser from Zach
DannyArends
2016-04-20
Creating the analysis object and passing results to the results template
DannyArends
2016-04-20
[PATCH 082/100] Testing passing information between the templates
DannyArends
2016-04-20
Loading the library and mapping the scan function
DannyArends
2016-04-20
Connecting the CTL analysis to the collection overview, by adding a button
DannyArends
2016-04-20
Adding initial file to perform CTL analysis
DannyArends
2016-04-20
[PATCH 078/100] Adding empty templates for CTL in GN2
DannyArends
2016-04-20
Cleaning up the WGCNA parameter input template
DannyArends
2016-04-20
[PATCH 061/100] Put R/qtl .cross file in TMPDIR
Pjotr Prins
2016-04-20
Show error when GENODIR is missing
Pjotr Prins
2016-04-20
Remove dbdoc
pjotrp
2016-04-20
Removed symlinks
pjotrp
2016-04-20
r-wgcna: Fix paths
pjotrp
2016-04-20
More hard-coded
pjotrp
2016-04-20
[PATCH 050/100] Using out-of-tree storage. Added comments for plink,
...
gemma.
Pjotr Prins
2016-04-20
[PATCH 049/100] SNP_PATH: removal
Pjotr Prins
2016-04-20
[PATCH 047/100] This commit moves the image generation dir *outside* the git ...
Pjotr Prins
2016-04-20
external program should fail on return value not zero
pjotrp
2016-04-20
[PATCH 045/100] Reverted on previous changes. With a corrected
...
python2-piddle module the thing works. Turns out that the version we are using is not the same as the public one. Despite the same version number.
Pjotr Prins
2016-04-20
Minor fixes
pjotrp
2016-04-20
[PATCH 042/100] Sanitizing locations
Pjotr Prins
2016-04-20
[PATCH 041/100] Fixes for running tools
Pjotr Prins
2016-04-20
When a sample does not exist we should not set sample_data to None. Better to...
pjotrp
2016-04-20
-a
...
[PATCH 039/100] Removing commented code
Pjotr Prins
2016-04-20
-a
...
[PATCH 038/100] Fix compile errors
Pjotr Prins
2016-04-20
[PATCH 037/100] WebQtlConfig: sanitizing naming and used vars
Pjotr Prins
2016-04-20
Settled on the _COMMAND syntax over _RUN
pjotrp
2016-04-20
With missing samples to not add them to the result set
pjotrp
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