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Fixed a couple minor html syntax erors in login_user.html and base.html
Changed export button on correlation page to csvHtml5, but still has problem with commas in fields being interpreted as a new column
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expression, location, etc)
Added back some colorbox directories that we apparently need (I had removed them in an earlier commit)
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Conflicts:
.gitignore
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not work because of the new dataset_menu_structure.json file
An Intro section is also added to the header, though for the time being its contents aren't populated and the edit option isn't working
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Fixed script that generates dataset dropdown json file to include accession id
Fixed dataset link on search results page
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some corresponding imports
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Single chr now works for R/qtl (didn't before)
Merged qtl reaper code into marker_regression.py
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Removed loading bar that appeared on show trait page since it didn't work with GN1 mapping (which opens in a new page)
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Mapping results table now works
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draw to different chr areas though
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Added a bunch of print statements to GN1 mapping code to locate where code stalls
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regression code; gn1 code now runs without errors but still need to give output to template
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Scatterplot matrix feature only appears if user is logged in now
Committing current progress on mapping page (it can at least import the file now, but there are still errors)
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pylmm was wrong
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only worked when the user hits enter
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Fixes issue #126.
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point to static/dbdoc. Added static/dbdoc folder.
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contains *only* whitespace.
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still)
Fixed issue where cM locations for R/qtl were displayed as Mb and had used Mb Chr lenghts for the scale
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Updated wgcna_setup to use Bootstrap error messages and form styling.
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search terms are empty. This avoids an internal server error.
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used for correlation matrix
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Fixed table for some expression dataset searches
Added collection button to correlation page
Added color gradient to correlation matrix
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On branch master
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WGCNAintegration
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autoselected. We need to discuss which parameters we want to expose to the user.
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eigen genes per module
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WGCNAintegration
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