| Age | Commit message (Expand) | Author |
|---|
| 2017-05-22 | Added submit trait to header menu and fixed some minor issues with Network Gr... | zsloan |
| 2017-05-22 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan |
| 2017-05-22 | Added print lines showing url to views.py and updated dataset menu json file | zsloan |
| 2017-05-21 | Merge from the diet branch.... * refactored ./bin/genenetwork2 and /etc/default_settings
- better detection of Guix
- removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS
- removing some default settings, such as PYLMM_COMMAND
- rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY
- added GUIX_JS_PATH for JS modules
* Added documentation on installing binary GN2
* Updated Twitter board to latest version in Guix - it had broken
* Updated many tools in the latest Guix profile
| Pjotr Prins |
| 2017-05-16 | Fixed issue that caused mapping to not work for R/qtl...Updated dataset menu dropdown info
Began adding option to download statistics figures as PNG
| zsloan |
| 2017-05-08 | corr_scatter_plot update (use nvd3) | Lei Yan |
| 2017-05-04 | renamed: gn2_lei.conf -> gn2-lei.conf | Lei Yan |
| 2017-05-04 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Lei Yan |
| 2017-04-25 | Fixed issue with correlation result trait links if target dataset is differen......Improved collection list and view table appearances
Added question mark image for glossary entries in table headers
Fixed issue where extra decimal place sometimes appeared in bar chart Y axis tick values
| zsloan |
| 2017-04-17 | Added option to remove collections from collection list page...Improved appearance of search result and collection tables
| zsloan |
| 2017-04-06 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Lei Yan |
| 2017-04-05 | Added images directory with various gifs, etc | zsloan |
| 2017-04-05 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into development | zsloan |
| 2017-04-05 | - Temporary traits can be created, viewed, and added to collections...- Correct PCA trait data is created but can't be saved yet
- Added inner margins by increasing xDomain and yDomain of probability plot on trait page
- Increased X/Y-axis label font size
- Turned "processes" to 0 on runserver.py for PROD setting, since it doesn't work with threading
- Improved appearance of correlation page table
- Added links to github to index page
- Removed js_data from GEMMA/PLINK mapping results, since it isn't used for those
- Removed "Tissue" from trait page for phenotype traits
| zsloan |
| 2017-04-04 | Change scatterplot title font size | Lei Yan |
| 2017-04-04 | Change scatterplot image buffer/inner | Lei Yan |
| 2017-04-04 | align X and Y meta info | Lei Yan |
| 2017-03-30 | Change "Correlation Scatterplot" size, font, color, etc. | Lei Yan |
| 2017-03-16 | Merge /home/zas1024/gene | Lei Yan |
| 2017-03-16 | Add meta info (X axis, Y axis) for Correlation Scatterplot | Lei Yan |
| 2017-02-09 | Fixed issue where I forgot to add GeneticType to the query_for_group query fo......Increased digits of some Basic Statistics values from 2 to 3
| zsloan |
| 2017-02-09 | Changed second column header to 'Value' when there's only one sample group | zsloan |
| 2017-02-09 | Added genetic_type to DatasetGroup object to differentiate between which grou......Minor changes/improvements for trait page
Updated dataset_menu_structure.json
| zsloan |
| 2017-02-08 | Changed the way .fam files are written/read, which fixes the issue with GEMMA... | zsloan |
| 2017-02-06 | Mapping results figure now correctly says whether GEMMA was used as mapping m... | zsloan |
| 2017-02-06 | Merge branch 'development' of github.com:zsloan/genenetwork2 | zsloan |
| 2017-02-06 | Commented out reference to trait_submission since it's not used yet | zsloan |
| 2017-02-06 | Merge branch 'master' of github.com:zsloan/genenetwork2 | zsloan |
| 2017-02-06 | Fixed appearance of several tables (search, mapping results, sample data)...Temporarily removed second sample table for CFW traits
Fixed location of global search bar to work with wider screens
| zsloan |
| 2017-02-02 | Merge /home/zas1024/gene | Lei Yan |
| 2017-01-26 | Merge pull request #1 from genenetwork/testing...Various changes/fixes | zsloan |
| 2017-01-26 | GEMMA now works with CFW data (had to update where it looks for the input fil......Y-axis for GEMMA now says -log(p)
Updated the style of the trait sample data table in the trait page
Updated dataset_select_menu_orig.js to also build just the Species and Group drop-downs for the trait input page (as opposed to all 4 drop-downs)
Updated dataset menu json file
Added option to show and hide columns to regular search page using colVis
Changed regular and global search result table styles/column widths
Began work on user trait submission code (not working yet though)
Began work on static loading page for mapping results
| zsloan |
| 2017-01-03 | Fixed appearance of samples tables in show_trait to look like all the other t......Disabled sorting for the first column (check box) of the samples tables
| zsloan |
| 2016-12-15 | Merge pull request #234 from zsloan/master...Various changes | zsloan |
| 2016-12-15 | Changed table appearance...Updated dataset_menu_structure.json
| zsloan |
| 2016-12-13 | Fixed a problem related to the last commit that caused a problem when loading... | zsloan |
| 2016-12-12 | Moved a bunch of functions out of the GeneralTrait class that didn't need to ......Improved loadings plot on the correlation matrix page to look like GN1's figure (though it's vector and GN1's was static)
Removed some unused code from show_trait.py
changed appearance of table headers some, though needs a little more work
Updated dataset_menu_structure.json
| zsloan |
| 2016-11-29 | Fixed loadings plot so it looks like the GN1 figure | zsloan |
| 2016-11-21 | Fixed correlation page so it correctly sorts by the scientific notation for s......Set default sort for correlation page to sample p
Improved appearance of correlation matrix some by decreasing line height
Added labels to each figure/table on the correlation page
| zsloan |
| 2016-11-18 | Fix sql error: (GeneNetwork error: (_mysql_exceptions.OperationalError) (1054... | Lei Yan |
| 2016-11-15 | Fixed issue where sample values of 0 would sometimes be displayed as 'x', whi......Fixed issue where the mean would sometimes be displayed into of the additive effect
| zsloan |
| 2016-11-11 | Fixed error causing correlation matrix page to not work with 2 traits (relate......Also improved factor loads table to show only two factors when there are two traits
Fixed error related to get_traits_from_collections.js being called in collections/list before jquery is defined
| zsloan |
| 2016-11-11 | Fixed problem that caused checkboxes to not work with Scroller search results......Improved the way the table width is set for search results page
| zsloan |
| 2016-11-08 | Adding the joss badge | DannyArends |
| 2016-11-07 | Adding functions addNode and addEdge, to separate out the cytoscape graph cre... | DannyArends |
| 2016-11-07 | Adding the reference to the paper, and updating the output to show the cytosc... | DannyArends |
| 2016-11-07 | Adding code to the ctl analysis file to output nodes and edges for cytoscape | DannyArends |
| 2016-11-07 | Javascript file (based on the correlation file) to dsplay CTL networks using ... | DannyArends |
| 2016-11-02 | Fixed typos causing genofile selector to not show up in mapping options | zsloan |
| 2016-11-02 | Added toggleable short and long labels to correlation matrix...Fixed issue where I forgot to remove a parameter from jsonable_table_row in trait.py
| zsloan |
