| Age | Commit message (Expand) | Author |
|---|
| 2020-08-24 | Rename file...* wqflask/tests/wqflask/marker_regression/test_display_mapping_results.py:
Rename test_display_marking_results.py to test_display_mapping_results.py
| BonfaceKilz |
| 2020-08-24 | Fix failing test...* wqflask/tests/wqflask/api/test_gen_menu.py: Update assertion. Result data
introduced in 092212df
Signed-off-by: BonfaceKilz <bonfacemunyoki@gmail.com>
| BonfaceKilz |
| 2020-08-24 | Fixed issue where im_drawer wasn't being set in drawHaplotypeBand...* wqflask/wqflask/marker_regression/display_mapping_results.py - defined
im_drawer in drawHaplotypeBand to fix errror and removed an unused
import
| zsloan |
| 2020-08-24 | The function draw_rotated_text_ was writing an image to /tmp, which GN2...user apparently doesn't have access to, so I replaced it with a link to
the dynamically set TEMPDIR
* wqflask/utility/pillow_utils.py - Replaced "/tmp/" in image location
with TEMPDIR
| zsloan |
| 2020-08-23 | Use Python3 string methods...* wqflask/utility/webqtlUtil.py (genRandStr): Replace "string.letters" with
"string.ascii_letters".
| BonfaceKilz |
| 2020-08-23 | Remove unused imports | BonfaceKilz |
| 2020-08-22 | Set min-width for search result table, since the description column...often looks weird if it gets below a certain width
* wqflask/wqflask/templates/search_result_page.html - Set min-width of
table container div to 1500px since that seems to be a reasonable width
that prevents the description column from getting too narrow
| zsloan |
| 2020-08-20 | Changed Molecular Trait Datasets to Molecular Traits in the Type...drop-down on the home page
* wqflask/wqflask/api_gen_menu.py - Changed where Molecular Trait
Datasets was hardcoded to Molecular Traits
| zsloan |
| 2020-08-20 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-20 | Handle module renames in the standard library...Run:
```
2to3-3.8 -f imports -w . && \
2to3-3.8 -f imports2 -w .
```
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-imports> and
<https://docs.python.org/2/library/2to3.html#2to3fixer-imports2>
| BonfaceKilz |
| 2020-08-20 | Disable python2 QTLReaper...* wqflask/base/data_set.py: Remove usage of "reaper" to load datasets
| BonfaceKilz |
| 2020-08-20 | Add backward support for urllib...* wqflask/base/trait.py: Remove unused imports
* wqflask/db/call.py (Bench): Add urllib2 fallback for python2
| BonfaceKilz |
| 2020-08-20 | Use dataTables.colResize.js and naturalSort from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.colVis.min.js from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.bootstrap.css from guix | BonfaceKilz |
| 2020-08-20 | Use scroller.dataTables.min.css from guix | BonfaceKilz |
| 2020-08-20 | Use dataTables.colReorder.js from guix | BonfaceKilz |
| 2020-08-20 | Use jquery.dataTables.js from guix | BonfaceKilz |
| 2020-08-20 | Use dataTables.buttons.min.js from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.dataTables.min.css from guix | BonfaceKilz |
| 2020-08-19 | Added Invert button to collection page...* wqflask/wqflask/templates/collections/view.html - Added the Invert
button back to the collection page; it was removed in the past but Rob
decided it should be re-added
| zsloan |
| 2020-08-19 | Tools used from the collection page now use all traits if no rows are...checked and there are fewer than 100 traits in the table
* wqflask/wqflask/static/new/javascript/search_results.js - Created
get_traits_from_table function to get the list of traits and check if
none are selected, and also renamed the previous function also called
get_traits_from_table to submit_traits_to_export_or_bnw since that
better describes what the function does
| zsloan |
| 2020-08-19 | Show short labels by default in Correlation Matrix...* wqflask/wqflask/templates/correlation_matrix.html - remove display:
none for short label div
| zsloan |
| 2020-08-19 | Remove extra whitespace(or add it) from comma separated items...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-urllib>
| BonfaceKilz |
| 2020-08-19 | Make Python more idiomatic...Run `2to3-3.8 -f idioms -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-idioms>
| BonfaceKilz |
| 2020-08-19 | Rename xrange() to range() and wrap existing range() calls with list...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-xrange>
| BonfaceKilz |
| 2020-08-19 | Handle the rename of urllib and urllib2 to the urllib package...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-urllib>
| BonfaceKilz |
| 2020-08-19 | Replace backtick repr with the repr() function...* wqflask/base/trait.py: See
<https://docs.python.org/2/library/2to3.html#2to3fixer-repr>
| BonfaceKilz |
| 2020-08-19 | Handle the move of reduce() to functools.reduce()...Run `2to3-3.8 -f reduce -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-reduce>
| BonfaceKilz |
| 2020-08-19 | Wrap `raise` statements in parenthesis...Run `2to3-3.8 -f raise -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-raise>
| BonfaceKilz |
| 2020-08-19 | Convert the use of iterator’s next() methods to the next() function...Run `2to3-3.8 -f next -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-next>
| BonfaceKilz |
| 2020-08-19 | Convert the old not-equal syntax, <>, to !=...Run `2to3-3.8 -f ne -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-ne>
| BonfaceKilz |
| 2020-08-19 | Replace `izip` with python's built-in equivalent...Run `2to3-3.8 -f itertools -w . && 2to3-3.8 -f itertools_imports -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-itertools_imports>
and <https://docs.python.org/2/library/2to3.html#2to3fixer-itertools>
| BonfaceKilz |
| 2020-08-19 | Change `dict.has_key(key)` to `key in dict`...Run `2to3-3.8 -f has_key -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-has_key>
| BonfaceKilz |
| 2020-08-19 | Fix dictionary iteration methods...Run `2to3-3.8 -f dict -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-dict> and
<https://stackoverflow.com/questions/17695456/why-does-python-3-need-dict-items-to-be-wrapped-with-list>
| BonfaceKilz |
| 2020-08-19 | Remove erroneous `if .. else` branch...* wqflask/utility/svg.py [roct, ellipse, SVGelement]: Raise only a single value error
if either height or width is not defined. Fixes parsing error when running
`2to3-3.8 -f apply -w .`
| BonfaceKilz |
| 2020-08-19 | Wrap `map()` in a `list` call...Run `2to3-3.8 -f map -w .`
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-map>
| BonfaceKilz |
| 2020-08-18 | Apply pep8...* wqflask/utility/svg.py: Apply pep8 to fix indentation error when running
`2to3-3.8 -w .`:
````
RefactoringTool: Can't parse ./wqflask/utility/svg.py: IndentationError: unindent does not match any outer indentation level (<tokenize>, line 403)
````
| BonfaceKilz |
| 2020-08-18 | Replace "<>" with "!="...* wqflask/utility/svg.py: Use "!=". The operator, "<>" is removed in Python3
| BonfaceKilz |
| 2020-08-18 | Wrap print statements in parentheses | BonfaceKilz |
| 2020-08-18 | Fix malformed docstring...* wqflask/utility/Plot.py: Update docstring.
| BonfaceKilz |
| 2020-08-17 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-18 | Fix positioning for many instances of text in the mapping figure...* wqflask/wqflask/marker_regression/display_mapping_results.py: Many text
instances had their positions changed by the switch from piddle to PIL. Change
various Y offsets and in some cases changing the logic of the way text is
positioned related to its length and font size.
* wqflask/wqflask/static/fonts/verdanab.ttf: Add bold Verdana, since there needs
to be a separate font file for bold text.
| zsloan |
| 2020-08-17 | Placed X/Y trait info before the table on the correlation scatterplot...page
* wqflask/wqflask/templates/corr_scatterplot.html - reordered table and
X/Y trait info divs
| zsloan |
| 2020-08-10 | Add fonts for pillow...* wqflask/wqflask/marker_regression/display_mapping_results.py: replace piddle
method with PIL.ImageFont
* wqflask/wqflask/static/fonts: Add fonts in path
| Pjotr Prins |
| 2020-08-08 | Add a basic test for test_display_marking_results.py...* wqflask/tests/wqflask/marker_regression/__init__.py: Add it
* wqflask/tests/wqflask/marker_regression/test_display_marking_results.py: Check
that PIL colors are being used instead of the deprecated Piddle colors.
| BonfaceKilz |
| 2020-08-08 | Change Y Coodinate system...* wqflask/wqflask/marker_regression/display_mapping_results.py: Piddle seemed to
centre text about the given Y coordinate, while Pillow requires specification to
top-left corner of the text. This slight change means text all over the image is
displaced somewhat, and this fixes the coordinate system for some of the text.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Fix placement for axes labels...* wqflask/wqflask/marker_regression/display_mapping_results.py: Fix the
placement for the axes labels.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Use TEXT_Y_DISPLACEMENT instead of magic numbers...* wqflask/wqflask/marker_regression/display_mapping_results.py: Use
TEXT_Y_DISPLACEMENT instead of magic numbers to help with making it clear that
the drawn text is displaced somewhat.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Give rectangles black outlines...* wqflask/wqflask/marker_regression/display_mapping_results.py: Give the
rectangles black outlines to correspond to earlier drawings.
| Muriithi Frederick Muriuki |
