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2016-04-20Minor changes to the CTL setup templateDannyArends
2016-04-20Using the geno parser to get/parse the genotypes for the datasetDannyArends
2016-04-20Adding the geno file parser from ZachDannyArends
2016-04-20Creating the analysis object and passing results to the results templateDannyArends
2016-04-20[PATCH 082/100] Testing passing information between the templatesDannyArends
2016-04-20Loading the library and mapping the scan functionDannyArends
2016-04-20Connecting the CTL analysis to the collection overview, by adding a buttonDannyArends
2016-04-20Adding initial file to perform CTL analysisDannyArends
2016-04-20[PATCH 078/100] Adding empty templates for CTL in GN2DannyArends
2016-04-20Cleaning up the WGCNA parameter input templateDannyArends
2016-04-20[PATCH 061/100] Put R/qtl .cross file in TMPDIRPjotr Prins
2016-04-20Show error when GENODIR is missingPjotr Prins
2016-04-20Remove dbdocpjotrp
2016-04-20Removed symlinkspjotrp
2016-04-20r-wgcna: Fix pathspjotrp
2016-04-20More hard-codedpjotrp
2016-04-20[PATCH 050/100] Using out-of-tree storage. Added comments for plink,Pjotr Prins
2016-04-20[PATCH 049/100] SNP_PATH: removalPjotr Prins
2016-04-20[PATCH 047/100] This commit moves the image generation dir *outside* the git ...Pjotr Prins
2016-04-20external program should fail on return value not zeropjotrp
2016-04-20[PATCH 045/100] Reverted on previous changes. With a correctedPjotr Prins
2016-04-20Minor fixespjotrp
2016-04-20[PATCH 042/100] Sanitizing locationsPjotr Prins
2016-04-20[PATCH 041/100] Fixes for running toolsPjotr Prins
2016-04-20When a sample does not exist we should not set sample_data to None. Better to...pjotrp
2016-04-20-aPjotr Prins
2016-04-20-aPjotr Prins
2016-04-20[PATCH 037/100] WebQtlConfig: sanitizing naming and used varsPjotr Prins
2016-04-20Settled on the _COMMAND syntax over _RUNpjotrp
2016-04-20With missing samples to not add them to the result setpjotrp
2016-04-20This threw an error when sample is missing in the DB.pjotrp
2016-04-20[PATCH 033/100] Refactored file searchingPjotr Prins
2016-04-20[PATCH 032/100] file locating: error checking is built-inPjotr Prins
2016-04-20Fine tuning file locatingpjotrp
2016-04-20tools.py: add function locate_without_errorpjotrp
2016-04-20[PATCH 027/100] Introduce tools.locatePjotr Prins
2016-04-20[PATCH 026/100] Introducing cached values PYLMM_COMMAND,Pjotr Prins
2016-04-20Introducing TEMPDIRpjotrp
2016-04-20[PATCH 024/100] Sanitizing file handlingPjotr Prins
2016-04-20[PATCH 023/100] WIP fixing all pathsPjotr Prins
2016-04-20Remover dependency to logger_tree (may reintroduce later)pjotrp
2016-04-20[PATCH 018/100] Find external tools: refactored code to work with GNU GuixPjotr Prins
2016-04-20Removed import htmlgen as is not used (apparently)pjotrp
2016-04-18Additive effect lines are now separated by chromosome (like the qtl line in t...zsloan
2016-04-14Fixed issue where qtl lines in interval mapping wouldn't connect between chro...zsloan
2016-04-13Moved the code getting the description/location because it was throwing an er...zsloan
2016-04-13Global search should be able to return description and location columns nowzsloan
2016-04-11Changed the way trait data is retrieved for the global search page (it now ge...zsloan
2016-04-07Added option to change the maximum y-axis value for GN1 mapping figurezsloan
2016-04-07Permutation figure and x-axis label should change to correctly reflect the ma...zsloan
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