Age | Commit message (Expand) | Author |
---|---|---|
2020-11-09 | correct typo and variable naming | Alexanderlacuna |
2020-11-09 | refactor test_run_gemma function | Alexanderlacuna |
2020-11-09 | remove whitespace in marker_regression | Alexanderlacuna |
2020-11-09 | remove unnecessary side_effect set to None | Alexanderlacuna |
2020-11-09 | add tests for geno_db_exists in marker_regression/run_mapping.py | Alexanderlacuna |
2020-11-09 | add test for get_genofile_samplelist in marker_regression/run_mapping.py | Alexanderlacuna |
2020-11-09 | mock logger in marker_regression/gemma_mapping.py | Alexanderlacuna |
2020-11-09 | add test for run_gemma function in marker_regression/gemma_mapping.py | Alexanderlacuna |
2020-11-09 | refactor marker_regression/gemma-mapping.py run-gemma function to avoid Index... | Alexanderlacuna |
2020-11-08 | add tests for marker_regression/plink_mapping.py | Alexanderlacuna |
2020-11-08 | add tests for marker_regression/gemma_mapping | Alexanderlacuna |
2020-11-08 | Change defaultline argument in the build_line_list from None to empty string | Alexanderlacuna |
2020-11-06 | Removed the page selection from the top of the table because it created an aw... | zsloan |
2020-11-06 | Changed the show/hide column buttons to use DataTables API + a few other chan......- Fixed a couple column header glossary links to point to GN1 - Added trait_list.css for styling a couple elements common to similar pages (like correlations or view collection) | zsloan |
2020-11-06 | Added min-width for the divs containing the analysis tools and table options,......Also made some indentation more consistent | zsloan |
2020-11-06 | Added new css file for pages that have trait list tables (not sure what else ... | zsloan |
2020-11-06 | Increased the min-width for the show_trait page container div for all the acc... | zsloan |
2020-11-06 | After I changed some class names in the trait page to use - instead of _ (to ... | zsloan |
2020-11-04 | Changed numeric-html sorting for the Tissue/Lit r columns to natural-minus-na......* wqflask/wqflask/templates/correlation_page.html - Replaced numeric-html sorting with natural-minus-na for the lit/tissue r columns | zsloan |
2020-11-04 | Merge pull request #475 from Alexanderlacuna/test-showtrait...Add more tests for show trait module | BonfaceKilz |
2020-11-04 | correct a typo | Alexanderlacuna |
2020-11-04 | remove extra whitespace | Alexanderlacuna |
2020-11-04 | remove whitespace in line 119-120 | Alexanderlacuna |
2020-11-04 | remove whitespace | Alexanderlacuna |
2020-11-04 | remove whitespace and assertIs | Alexanderlacuna |
2020-11-03 | Merge pull request #479 from zsloan/bug/haplotype_analyst_error_fix...Bug/haplotype analyst error fix | zsloan |
2020-11-03 | Changed the syntax for the "sort" function in the docstring of GeneralObject ......* wqflask/base/GeneralObject.py - edited docstring to be correct for Python 3 | zsloan |
2020-11-03 | Fixed a sort used when doing the haplotype analysis to be compatible with Pyt......* wqflask/wqflask/marker_regression/display_mapping_results.py - The arguments for sort are different in Python 3, so it was changed to be compatible | zsloan |
2020-11-03 | Merge pull request #478 from zsloan/loading_page_n_fix...Joined sample names in primary_samples and all_samples with commas be… | zsloan |
2020-11-03 | Joined sample names in primary_samples and all_samples with commas because th......* wqflask/wqflask/show_trait/show_trait.py primary_samples and all_samples passed as hidden form inputs now have names split by commas so they can be counted correctly when displaying the N on the mapping loading screen | zsloan |
2020-11-03 | Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te... | Alexanderlacuna |
2020-11-03 | remove unnecessary comments | Alexanderlacuna |
2020-11-03 | add pep8 formatting | Alexanderlacuna |
2020-11-03 | add tests for the get_categorical_variables function | Alexanderlacuna |
2020-11-03 | switch from assertFalse to assertIs | Alexanderlacuna |
2020-11-03 | switch from assertTrue/False to assertIs to make the tests tighter | Alexanderlacuna |
2020-11-03 | use assertTrue and assertFalse in while testing boolean | Alexanderlacuna |
2020-11-02 | Merge pull request #476 from zsloan/correlation_errors_fix...Correlation errors fix | zsloan |
2020-11-02 | Created function for encoding the column value as bytes when fetching from th......* wqflask/utility/redis_tools.py - Created function load_json_from_redis that encodes the key (column_value) when fetching a value from the JSON pulled from Redis | zsloan |
2020-11-02 | Changed correlation page logic to skip over traits that share fewer than 6 sa......* wqflask/wqflask/correlation/show_corr_results.py - Moved the num_overlap check so that it never attempts to calculate the correlation if it's too low + checked if trait_object is None in the main loop (since it would be returned as None if the user doesn't have permissions | zsloan |
2020-11-02 | add better formatting | Alexanderlacuna |
2020-11-02 | add function docstring | Alexanderlacuna |
2020-11-02 | add tests for show trait module | Alexanderlacuna |
2020-10-31 | Removed a line adding the ceiling of the Max LRS to the Y axis, since it has ......* wqflask/wqflask/marker_regression/display_mapping_results.py - Removed a line adding the ceiling of the max LRS/LOD value to the Y axis | zsloan |
2020-10-31 | remove redundant classes | Alexanderlacuna |
2020-10-31 | use descriptive variable names | Alexanderlacuna |
2020-10-31 | Use more descriptive variable and class names | Alexanderlacuna |
2020-10-30 | add test for get_export_metadata | Alexanderlacuna |
2020-10-30 | Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te... | Alexanderlacuna |
2020-10-29 | Fixed issue with single-chromosome mapping after the bootstrap fix and fixed ......* wqflask/wqflask/marker_regression/display_mapping_results.py - Cast self.qtlresults 'chr' as a string since the comparison between it and the chromosome names was faililng due to numeric chromosomes being int type + used a list comprehension that converts None to an empty string when creating a comma-joined string from the list of mapping output files | zsloan |