| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2019-09-24 | Fixed issue that caused zooming for mapping to not work (that was caused by ↵ | zsloan | |
| the fix for zooming into temp trait mapping results) | |||
| 2019-09-24 | Fixed issue that caused GEMMA to not work with genotype files without cM, ↵ | zsloan | |
| though this issue still needs to be dealt with to get the new qtlreaper working | |||
| 2019-09-24 | Fixed some minor html issues with the index page and added the globe thingy ↵ | zsloan | |
| that shows where people have visited from | |||
| 2019-09-24 | Fixed issue that caused logging in to stop working with new GUIX build | zsloan | |
| Removed some unused JS libraries | |||
| 2019-09-20 | Converted permutation histogram to use plotly | zsloan | |
| 2019-09-20 | Include wikidata aliases in search; need to make it also include GN alises ↵ | zsloan | |
| though | |||
| 2019-09-20 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2019-09-20 | Revert "Migrate to newer HTMLGen"revert-366-360_update_htmlgen | zsloan | |
| 2019-09-20 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2019-09-20 | Fixed issue where remapping or zooming in didn't work for temp/PCA traits | zsloan | |
| 2019-09-20 | Merge branch 'testing' into 360_update_htmlgen | zsloan | |
| 2019-09-09 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2019-09-09 | Just adding the option to remove columns from correlation results and the ↵ | zsloan | |
| changes to permutation histogram and table widths | |||
| 2019-09-09 | Revert "Add option to hide columns in correlation results" | zsloan | |
| This reverts commit cc12fe06593f4957fb2b5b641ebe7e5cf43453b1. Mistakenly included changes to tools.py that are only for the new guix build | |||
| 2019-09-09 | Add option to hide columns in correlation results | zsloan | |
| Increased width of permutation histogram Increased a couple table widths that had crowded header text on certain browers (maybe just Safari) | |||
| 2019-09-06 | Fix name of javascript-twitter-post-fetcher | Pjotr Prins | |
| 2019-08-29 | Fixed issue where LOD to LRS conversions weren't showing up correctly in the ↵ | zsloan | |
| table Fixed issue where non-LOCO GEMMA wasn't working correctly | |||
| 2019-08-29 | Fixed remaining issue where columns didn't show up right and the mean/r ↵ | zsloan | |
| filter didn't work right for non-ProbeSet target datasets | |||
| 2019-08-29 | Added default Loading text for dropdowns | zsloan | |
| Changed order of columns for correlatoin page and removed Y scrolling Changed name and order of top menu items some | |||
| 2019-08-27 | Removed part of a query that was slowing down dropdown menu generation; ↵ | zsloan | |
| doesn't seem to be needed, but should keep an eye out for any issues | |||
| 2019-08-27 | Zooming on a chromosome now also zooms the genome browser | zsloan | |
| Added genome browser css because it wasn't previously committed | |||
| 2019-08-27 | Fixed issue that caused Variant Browser to stop working (related to change ↵ | zsloan | |
| to return query results as unicode) Fixed issue that was causing Indel results in the Variant Browser to not work | |||
| 2019-08-26 | Capitalized first letter in description on trait page | zsloan | |
| 2019-08-26 | Output filenames are now passed around when when zooming with the new ↵ | zsloan | |
| qtlreaper, so zooming into chromosomes and ranges should be faster Updated genome browser and fixed an issue where it created multiple copies when the tab was clicked repeatedly Added option to filter correlation page results by R and mean expression | |||
| 2019-08-23 | Genome Browser only loads when the tab is clicked now, for slower ↵ | zsloan | |
| computers/browsers | |||
| 2019-08-22 | Changed header drop-down menu layout | zsloan | |
| Added a couple new third party links Added link to GN1 trait page in trait pages Fixed gene global search table appearance | |||
| 2019-08-20 | Added horizontal scroll for mapping figure when window isn't wide enough | zsloan | |
| Changed the way some mapping options are displayed on trait page Changed the header for the stats table and bar graph to increase the trait description | |||
| 2019-08-16 | Added text for LOD searches back to index page | zsloan | |
| 2019-08-15 | Fixed bug related to adding LOD search that caused non-keyword searches to ↵ | zsloan | |
| not work | |||
| 2019-08-15 | Added change to make search result page description correct for LOD ↵ | zsloan | |
| searches, since that was missing from last commit | |||
| 2019-08-15 | LOD searches should now also work | zsloan | |
| 2019-08-14 | removed LOD text from index page until LOD search works and cleaned up ↵ | zsloan | |
| mapping options appearance/text some | |||
| 2019-08-14 | Genome browser now takes chromosome list and lengths as input so it will ↵ | zsloan | |
| work correctly with non-mouse species or centimorgan positions | |||
| 2019-08-13 | Updated text on main search page | zsloan | |
| 2019-08-13 | Annotation links for markers only appear if they're in our database now | zsloan | |
| 2019-08-12 | Fixed some things to update the genome browser and get it running correctly | zsloan | |
| Fixed issue where trait page for genotype traits didn't work Removed bad y axis title on probability plot | |||
| 2019-08-07 | Added Christian's genome browser, but still need to clean things up a bunch ↵ | zsloan | |
| since now it has to create two separate marker lists | |||
| 2019-08-07 | Fixed issue with non-LOCO GEMMA mapping | zsloan | |
| 2019-08-07 | Changed rn3 to rn6 for a couple external links on the trait page | zsloan | |
| Made some text bold on trait page details | |||
| 2019-08-02 | Updated phenogen link in mapping results | zsloan | |
| 2019-08-02 | Fixed issue that caused heatmap to not work | zsloan | |
| 2019-08-02 | Fixed issue where zooming into chromosomes or range didn't work with reaper | zsloan | |
| 2019-08-02 | Fixed issue where resizing correlation page could make buttons get pushed down | zsloan | |
| 2019-08-02 | Added the gif for the loading screen | zsloan | |
| 2019-08-01 | Updated aliases to get all species aliases and remove duplicates | zsloan | |
| 2019-08-01 | Added wikidata aliases | zsloan | |
| Fixed year to not be a hyperlink when no pubmed id Fixed first column width so it doesn't go onto two lines for trait details | |||
| 2019-08-01 | Replaced loading bar with a gif that should work in Safari | zsloan | |
| 2019-08-01 | Made some more aesthetic changes to various pages and charts/figures | zsloan | |
| Added some information to the mapping loading page | |||
| 2019-07-31 | Fixed header to not have a fixed width, and added min-widths to many pages ↵ | zsloan | |
| to avoid them ever looking strange when the window's width is lowered Significnatly improved correlation matrix output Fixed issue where zooming into Mb ranges with GEMMA mapping output often showed no results; this fix is not ideal and is just a way to work around the results currently not being sorted correctly. Later I should fix the sorting | |||
| 2019-07-30 | Fixed correlation matrix width, colors, and padding | zsloan | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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