genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2020-11-26	add environment markdown	Alexander Kabui

2020-11-26	add re-used css to markdown.css for easy maintenance and reusability	Alexander Kabui

2020-11-26	add links page	Alexander Kabui

2020-11-26	add endpoint for polices,environments and policies	Alexander Kabui

2020-11-26	add edit button in glossary page	Alexander Kabui

2020-11-26	register view,policies blueprint	Alexander Kabui

2020-11-26	add policies page	Alexander Kabui

2020-11-26	build url for functions	Alexander Kabui

2020-11-26	add css for container	Alexander Kabui

2020-11-26	remove static views form wqflask/view.py	Alexander Kabui

2020-11-26	delete templates/links page	Alexander Kabui

2020-11-26	move css to markdown and add references	Alexander Kabui

2020-11-26	delete reference html page	Alexander Kabui

2020-11-26	modify github button	Alexander Kabui

2020-11-26	modify references links	Alexander Kabui

2020-11-26	register references blueprint	Alexander Kabui

2020-11-26	add reference markdown and github button	Alexander Kabui

2020-11-25	Merge pull request #489 from Alexanderlacuna/fix-references	BonfaceKilz
	Fix broken UI
2020-11-24	solve issues to do with decoding in python3	Alexander Kabui

2020-11-23	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	zsloan

2020-11-23	Changed correlation matrix cells for traits with zero shared samples to ↵	zsloan
	instead say N/A and be a shade of grey
2020-11-20	Replace mockobject with dataclasses	BonfaceKilz
	* wqflask/tests/unit/wqflask/test_markdown_routes.py (MockRequests404): Use dataclasses. (MockRequests200): Ditto.
2020-11-20	Update tests to use new gn2-docs url	BonfaceKilz

2020-11-20	Replace mistunes with markdown library	BonfaceKilz
	* wqflask/wqflask/markdown_routes.py (render_markdown): Use markdown library instead of mistunes.
2020-11-20	Point url for fetching md content to gn-docs repo	BonfaceKilz
	* wqflask/wqflask/markdown_routes.py (render_markdown): Use gn-docs URL to fetch markdown content.
2020-11-20	Remove glossary markdown template	BonfaceKilz
	* wqflask/wqflask/static/markdown/: Delete folder. Files moved to https://github.com/genenetwork/gn-docs
2020-11-19	Removed lines that check that all traits are part of the same group,	zsloan
	since it might be the case in the future that different groups still share sample names (and it's not really necessary since we check how many samples are shraed between each individual pair of traits)
2020-11-18	Fixed issue where the cofactor trait descriptions didn't work correctly	zsloan
	for genotype/snp cofactors (the code previously only accounted for probeset/phenotype cofactors, so it was treating genotypes/snps like phenotype traits)
2020-11-18	Changed default Low/High colors for the correlation scatterplot cofactor	zsloan
	coloring to Blue/Red respectively (was originally Light Grey/Black)
2020-11-18	Added some jquery closing the "Add To Collection" colorbox window after	zsloan
	its form is submitted
2020-11-18	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	zsloan

2020-11-18	Fixed issue that was causing scatterplot cofactors to not work if the	zsloan
	cofactors were genotypes (because it tried to get the "description_display" which doesn't exist for genotype traits)
2020-11-18	Removed console.log and commented out statements from	zsloan
	get_traits_from_collection.js
2020-11-18	Fixed "back_to_collections" function in get_traits_from_collection.js	zsloan
	(function that lets you return from viewing a collection to viewing the list of collections when selecting cofactors for scatterplot)
2020-11-18	Merge pull request #481 from Alexanderlacuna/test-SampleList	BonfaceKilz
	Test sample list
2020-11-16	update refactored natural_sort function in show_trait/SampleList.py	Alexanderlacuna

2020-11-12	Import fontawesome css/js and used its info character for glossary links on ↵	zsloan
	search results page
2020-11-12	Substituted -log(p) with -logP as mentioned in Rob's e-mail	zsloan

2020-11-12	Show Mb positions to 6 decimal places in mapping results table	zsloan

2020-11-11	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	zsloan

2020-11-11	Added Bonface to the footer	zsloan

2020-11-11	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵	BonfaceKilz
	feature/add-glossary-page
2020-11-11	Update image width	BonfaceKilz

2020-11-11	Add basic markdown styling	BonfaceKilz
	* wqflask/wqflask/static/new/css/markdown.css: New file. * wqflask/wqflask/templates/glossary.html: add markdown id to markdown container.
2020-11-10	Changed logic for creating temp trait SampleList to account for both traits ↵	zsloan
	encoded as bytes and traits encoded as strings, since temp traits created before and after the Python 3 switchover will have different encoding
2020-11-10	Fixed issue where strain values in bytes needed to be decoded when loading a ↵	zsloan
	Temp trait
2020-11-10	Changed "BXD-Harvested" to "BXD-Longevity" since that group was renamed and ↵	zsloan
	using the wrong name was causing correlations to not work.
2020-11-10	Add missing links and some markdown formatting(underline, bold)	BonfaceKilz
	* wqflask/wqflask/static/markdown/glossary.md: Update file.
2020-11-06	Removed the page selection from the top of the table because it created an ↵	zsloan
	awkward gap between the column show/hide buttons and the table, and this table will be changed to use Scroller instead of paging soon regardless
2020-11-06	Changed the show/hide column buttons to use DataTables API + a few other ↵	zsloan
	changes (for some reason none of my changes could be pushed from one of my local branches to origin/testing, so they're combined in this commit) - Fixed a couple column header glossary links to point to GN1 - Added trait_list.css for styling a couple elements common to similar pages (like correlations or view collection)