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2016-04-20[PATCH 041/100] Fixes for running toolsPjotr Prins
2016-04-20When a sample does not exist we should not set sample_data to None. Better to...pjotrp
2016-04-20-aPjotr Prins
2016-04-20-aPjotr Prins
2016-04-20[PATCH 037/100] WebQtlConfig: sanitizing naming and used varsPjotr Prins
2016-04-20Settled on the _COMMAND syntax over _RUNpjotrp
2016-04-20With missing samples to not add them to the result setpjotrp
2016-04-20This threw an error when sample is missing in the DB.pjotrp
2016-04-20[PATCH 033/100] Refactored file searchingPjotr Prins
2016-04-20[PATCH 032/100] file locating: error checking is built-inPjotr Prins
2016-04-20Fine tuning file locatingpjotrp
2016-04-20tools.py: add function locate_without_errorpjotrp
2016-04-20[PATCH 027/100] Introduce tools.locatePjotr Prins
2016-04-20[PATCH 026/100] Introducing cached values PYLMM_COMMAND,Pjotr Prins
2016-04-20Introducing TEMPDIRpjotrp
2016-04-20[PATCH 024/100] Sanitizing file handlingPjotr Prins
2016-04-20[PATCH 023/100] WIP fixing all pathsPjotr Prins
2016-04-20Remover dependency to logger_tree (may reintroduce later)pjotrp
2016-04-20[PATCH 018/100] Find external tools: refactored code to work with GNU GuixPjotr Prins
2016-04-20Removed import htmlgen as is not used (apparently)pjotrp
2016-04-18Additive effect lines are now separated by chromosome (like the qtl line in t...zsloan
2016-04-14Fixed issue where qtl lines in interval mapping wouldn't connect between chro...zsloan
2016-04-13Moved the code getting the description/location because it was throwing an er...zsloan
2016-04-13Global search should be able to return description and location columns nowzsloan
2016-04-11Changed the way trait data is retrieved for the global search page (it now ge...zsloan
2016-04-07Added option to change the maximum y-axis value for GN1 mapping figurezsloan
2016-04-07Permutation figure and x-axis label should change to correctly reflect the ma...zsloan
2016-04-07SNP Track option should now work for GN1 mapping figurezsloan
2016-04-06The option to switch between LRS and LOD for the GN1 mapping figure should no...zsloan
2016-04-06Setting lodm to always be 1.0 fixes the issue where it would incorrectly disp...zsloan
2016-04-06Permutations (suggestive/significant lines, legend, and histogram) should now...zsloan
2016-04-05Bootstrap test should now work correctly for qtl reaper mapping method on ful...zsloan
2016-04-05Fixed issue where haplotype analyst option would appear when using genetic(ce...zsloan
2016-03-30Disabled Haplotype Analyst option if mapping scale is centimorgan/geneticzsloan
2016-03-30GN1 mapping now when mapping scale is centimorgan (for R/qtl)zsloan
2016-03-29Additive effect option now works for GN1 mapping figurezsloan
2016-03-29Forgot to add GeneralObject file needed for haplotype analyst in last commitzsloan
2016-03-29Haplotype Analyst now works for GN1 mapping figurezsloan
2016-03-28Legend option now works for GN1 mapping figurezsloan
2016-03-28Trait sample data table width now dynamically changes with number of attribut...zsloan
2016-03-24Graph width can now be set in Mapping Resultszsloan
2016-03-24Add the Gene Track option to display the Gene Band for single chromosome viewzsloan
2016-03-24Mapping results table is now limited to the top 200 markers; previously the p...zsloan
2016-03-23You can now select chromosome and an Mb range from the top menu and remapzsloan
2016-03-23Fixed GN1 mapping plots so that Y axis and the Y coordinates of manhattan plo...zsloan
2016-03-21Manhattan plot option now works for GN1 map, and GEMMA is set to display as m...zsloan
2016-03-21Changed code parsing marker csv file to increase GEMMA speedzsloan
2016-03-18Forgot to not retrieve sample data for the phenotype global search with the l...zsloan
2016-03-18Replaced header with other information in qtl mapzsloan
2016-03-15Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
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