genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2020-04-21	Update views.py	acenteno
	Add credits link
2020-04-21	Create credits.html	acenteno
	Colleagues credit page
2020-04-21	Update base.html	acenteno
	Fix footer colleagues link to credits
2020-04-21	Update tutorials.html	acenteno
	Updated to v7
2020-04-21	Update base.html	acenteno
	Change position to tutorials link
2020-04-21	Update tutorials.html	acenteno
	Fix the title header
2020-04-21	Create tutorials.html	acenteno
	Link to the actual power point presentation
2020-04-21	Update views.py	acenteno
	Add tutorials link under News
2020-04-21	Update base.html	acenteno

2020-04-16	Fixed issue that caused submitted traits to not open properly when submitted ↵	zsloan
	to a group with case attributes + fixed a link to GN1
2020-04-16	Changed and re-ordered tools on View Collection page in the same way as the ↵	zsloan
	search result and correlation pages
2020-04-16	Many changes, including:	zsloan
	- Added permutation strata option for R/qtl - Made a variety of aesthetic changes to collections-related pages - Made a variety of aesthetic changes to the multi-trait tool options on the search result and correlation pages - Made some functional changes to collections that prevent duplicate traits and ensure new traits are at the top - The "Default Collection" is now always at the bottom of the collection list and renamed to "Your Default Collection"
2020-04-16	Made change that causes new traits to be at the top of a collection + ↵	zsloan
	prevents duplicates
2020-04-13	Changed Locus to Marker in table and fixed an issue with trying to zoom in ↵	zsloan
	on a chromosome after downloading permutation results
2020-04-13	Fixed issue that caused export for HET3-ITP traits to not work due to the ↵	zsloan
	backslash in one of the case attribute names + added a couple links for stats table items
2020-04-06	Added Mean column for phenotype traits in search and global search result tables	zsloan

2020-04-04	Changed Y axis on permutation histogram from Frequency to Count	zsloan

2020-04-04	Updated R/qtl description text	zsloan

2020-04-04	Added Chart Studio back to trait page Plotly figures and switched the ↵	zsloan
	PNG/SVG download icons; also upgraded Plotly, though I'm sure we'll want to move that out of git later
2020-04-04	Indices on the trait page sample table are now static, to allow for ↵	zsloan
	selecting ranges of indices after sorting a column
2020-04-03	Added option to select cofactors from collection for R/qtl	zsloan
	Fixed some issues with displaying the R/qtl results from the RData HET3-ITP dataa
2020-04-03	Fixed permutation histogram to show correct LRS/LOD measure on X axis	zsloan

2020-04-02	Fixed a dumb issue that broke the buttons on trait list pages like search ↵	zsloan
	results or correlation results
2020-04-01	Forgot to rearrange search result page buttons in previous commit, plus ↵	zsloan
	fixed an issue where .csv was missing from some filenames
2020-04-01	Adding export option to correlation page	zsloan
	Added ability to control in code the export file name Reorganized View Collection options
2020-03-27	Fixed issue where GEMMA wasn't showing up for certain groups	zsloan

2020-03-27	Temporary fix for issue with RData rqtl results having shifted postiions	zsloan

2020-03-27	Added integration for using RData files with R/qtl, plus some other changes ↵	zsloan
	to how it decides which mapping methods to display on the trait page
2020-03-25	Added fix for issue when creating collections (related to hmac import change)	zsloan

2020-03-19	Made a minor change just to help qtlreaper deal with genotype files with ↵	zsloan
	positions in bases instead of megabases
2020-03-15	Fixed digits issue, though still need to figure out how to increase gap ↵	zsloan
	between y axis and title
2020-03-12	Added back a library that is apparently used for the Copy To Other ↵	zsloan
	Collection feature
2020-03-12	Made some changes to how the mapping Y axis is determined/drawn; left in the ↵	zsloan
	commented-out old code until we're sure this works well
2020-03-11	Fixed issue that caused authors to be displayed incorrectly sometimes	zsloan

2020-03-10	Added back macaque monkey to dropdown generation, not sure why it was ↵	zsloan
	removed; need to ask Rob
2020-03-10	Fixed issue that caused some problems when verifying hmac	zsloan

2020-03-09	It seems that the cause might be that my user session was still active on ↵	zsloan
	production, which made the logic not work
2020-03-09	Made change that hopefully fixes the Redis issue in production; I think it's ↵	zsloan
	because HGETALL returns an empty list instead of None
2020-03-09	I think I found the issue; I only saw it on production instead of my branch ↵	zsloan
	because it was tied to a session expiring
2020-03-09	Change that might fix issue on production	zsloan

2020-03-09	Added the option to change collection names	zsloan
	Remooved a couple imports that weren't used
2020-03-09	I think this should complete consolidating all the collections code.	zsloan

2020-03-03	I made a pretty big mistake removing this file; I forgot that it was still ↵	zsloan
	used for some collection stuff
2020-03-03	Missed one more reference in helper_functions	zsloan

2020-03-03	And needed to remove duplicate hmac file; I somehow didn't notice that only ↵	zsloan
	one of those needed to be used
2020-03-03	Forgot to replace code referring to hmac function user_manager	zsloan

2020-03-03	Also needed to remove the old login code	zsloan

2020-03-03	was missing a couple files in last commit	zsloan

2020-03-03	Refactored all the anonymous (not logged-in) user stuff so that both ↵	zsloan
	logged-in and anonymous users share the same code
2020-03-02	Added icon links for Python and NIF	zsloan
	Changed the ipad/android icon to the CITG one Rob mentioned in his e-mail