| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2021-07-12 | tests: test_markdown_routes: Remove stubbed out tests | BonfaceKilz | |
| 2021-07-12 | templates: show_trait_details: Show edit buttons conditionally | BonfaceKilz | |
| * wqflask/wqflask/templates/show_trait_details.html: Check the data type, and load different edit buttons. | |||
| 2021-07-12 | wqflask: views: Add route for updating the probeset | BonfaceKilz | |
| 2021-07-12 | templates: edit_probeset: Add template for editing probeset data | BonfaceKilz | |
| * wqflask/wqflask/templates/edit_probeset.html: New file(template). | |||
| 2021-07-12 | wqflask: views: Add extra route showing probeset editing form | BonfaceKilz | |
| * wqflask/wqflask/views.py (edit_probeset): New function/ route. | |||
| 2021-07-12 | wqflask: views: Rename endpoint for editing a trait | BonfaceKilz | |
| * wqflask/wqflask/views.py (edit_trait): Rename to edit_phenotype. Also rename the endpoint to "/trait/<name>/edit/inbredset-id/<inbred_set_id>" to indicate that and inbredset-id is required. This endpoint will be only used for phenotypes. Finally, render the "edit_phenotype.html" template (update_trait): Rename to update_phenotype. Also, remove hard-coded redirect, and replace it with the correct values. * wqflask/wqflask/templates/edit_trait.html: Rename to edit_phenotype.html | |||
| 2021-07-09 | Merge branch 'testing' into feature/use_gn3_for_correlations | zsloan | |
| 2021-07-09 | Remove commented out function do_bicor | zsloan | |
| 2021-07-09 | Only show literature and tissue correlation options if the trait's dataset ↵ | zsloan | |
| is type ProbeSet | |||
| 2021-07-09 | Changed compute_corr_for_top_results to also do sample correlation when ↵ | zsloan | |
| literature or tissue correlation are selected | |||
| 2021-07-03 | Increased width of mapping options div and covariates window | zsloan | |
| 2021-07-01 | Fixed issue with suggestive/significant lines extending beyond figure edge + ↵ | zsloan | |
| fixed a couple issues with the last commit | |||
| 2021-07-01 | Fixed issue where the interval map QTL line might extend beyond the graph ↵ | zsloan | |
| edge when zoomed into a Mb range + removed some commented out code | |||
| 2021-07-01 | Fixed issue where zooming into chromosome 1 was causing the Y axis scaling ↵ | zsloan | |
| to be bad | |||
| 2021-07-01 | Fixed bug where there'd be an error if the max boot count is 0 for a chromosome | zsloan | |
| 2021-06-21 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2021-06-18 | Changed limit from 2000 markers to 10000 markers for the number to show in ↵ | zsloan | |
| mapping results table | |||
| 2021-06-18 | Added Scroller to mapping results table | zsloan | |
| 2021-06-18 | Re-enable bicor as an option in the trait page templatee | zsloan | |
| 2021-06-18 | Reenable PCA for correlation matrix | zsloan | |
| 2021-06-18 | Re-enable bicor for correlations and fix issue where ro.Vector needed to be ↵ | zsloan | |
| changed to ro.FloatVector | |||
| 2021-06-17 | The listserv link was marked as broken but is working, so I made it a link ↵ | zsloan | |
| again, but the IRC channel link is broken so I marked it as broken | |||
| 2021-06-17 | UCSC Genome Browser link was marked as a broken link, but it apparently ↵ | zsloan | |
| works now so I added it back as a link | |||
| 2021-06-17 | Only show all-numerical attributes in the 'Filter samples by value' drop-down | zsloan | |
| 2021-06-17 | Added function for getting list of attributes with all numerical values ↵ | zsloan | |
| (that can be used with the 'Filter by value' feature) | |||
| 2021-06-17 | Fixed issue that caused filtering by attribute values to not work if ↵ | zsloan | |
| attribute values didn't exist for some samples | |||
| 2021-06-17 | delete loggers and comments | Alexander Kabui | |
| 2021-06-17 | add f1list and parlist to primary_samples | Alexander Kabui | |
| 2021-06-17 | minor refactoring | Alexander Kabui | |
| 2021-06-17 | sort sample name by sample_ids | Alexander Kabui | |
| 2021-06-17 | remove print statements | Alexander Kabui | |
| 2021-06-17 | remove unused functions + minor fixes | Alexander Kabui | |
| 2021-06-17 | minor fix | Alexander Kabui | |
| 2021-06-17 | pep8 formatting | Alexander Kabui | |
| 2021-06-17 | add query for fetching probeset data | Alexander Kabui | |
| 2021-06-17 | delete loggers and comments | Alexander Kabui | |
| 2021-06-17 | add f1list and parlist to primary_samples | Alexander Kabui | |
| 2021-06-17 | minor refactoring | Alexander Kabui | |
| 2021-06-17 | sort sample name by sample_ids | Alexander Kabui | |
| 2021-06-17 | remove print statements | Alexander Kabui | |
| 2021-06-17 | remove unused functions + minor fixes | Alexander Kabui | |
| 2021-06-17 | minor fix | Alexander Kabui | |
| 2021-06-17 | pep8 formatting | Alexander Kabui | |
| 2021-06-17 | add query for fetching probeset data | Alexander Kabui | |
| 2021-06-16 | Fixed reference to target_trait['lrs_location'] that should have been ↵ | zsloan | |
| target_trait['location'] for correlations against genotypes | |||
| 2021-06-16 | Changed the function jsonable in trait.py to return a couple extra fields + ↵ | zsloan | |
| take dataset as an optional argument (to avoid having to pointlessly create it) | |||
| 2021-06-16 | Added function as_dict to data_set.py for situations where we don't want to ↵ | zsloan | |
| pass around the whole dataset object | |||
| 2021-06-16 | Changed set_other_template_vars to set_template_vars | zsloan | |
| 2021-06-16 | Rewrote show_corr_results.py to remove all code calculating correlations ↵ | zsloan | |
| (that was moved to correlation_gn3_api.py, which will probably be renamed at some point) and only include the code generating the table JSON and some template variables | |||
| 2021-06-16 | Added compute_all as parameter to compute_correlation and keyword arguments ↵ | zsloan | |
| to docstring | |||
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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