| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-01-28 | Use list rather than tuple | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Using a tuple, rather than a list for the HTTP methods in the route definition causes an error. This fixes that by using a list. | |||
| 2022-01-28 | Skip the target traits selection step | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Skip the target traits selection step, and only allow running the partial correlations against one of the available databases. | |||
| 2022-01-28 | Implement better styling | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Separate the form elements that allow selection from the elements that display previous selections. This allows styling of the "active" area of the form in a different way from the "display" area of the form, allowing the user to see information on their previous choices, even while making further selections for the partial correlations. | |||
| 2022-01-28 | Add "Partial Correlations" UI elements on collections page | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Add UI elements to trigger the partial correlations feature * Connect partial correlation view to the application * Point to correct application element for gunicorn | |||
| 2022-01-27 | Highlight rows selected by filterByIndex | zsloan | |
| This adds the "selected" class to rows selected by filterByIndex, which adds highlighting to them I also made the variables in this part of the code camel cased | |||
| 2022-01-27 | Changed var to let | zsloan | |
| 2022-01-27 | Removed unused variables code | zsloan | |
| 2022-01-27 | Added the div for showing the error when the Select Rows text has wrong syntax | zsloan | |
| 2022-01-27 | Replaced the try/catch with something checking for the correct pattern with ↵ | zsloan | |
| regex, for validating the Select Rows input | |||
| 2022-01-27 | Added a comment explaining what the parseIndexString function does | zsloan | |
| 2022-01-27 | Replaced a confusing for loop with something that is (hopefully) easier to ↵ | zsloan | |
| read and explicitly inverts start_index and end_index when the former is greater than the latter | |||
| 2022-01-27 | Changed functions in search_results.js to be camelCased, except for ↵ | zsloan | |
| change_buttons because it's referenced in many other files | |||
| 2022-01-27 | Removed unnecessary variable from for-loop in parse_index_string | zsloan | |
| 2022-01-27 | Changed the placeholder text for the table search to Search For | zsloan | |
| 2022-01-27 | Added some JS disabling form submission on hitting Enter, so that users can ↵ | zsloan | |
| hit Enter in the Select Rows text area | |||
| 2022-01-27 | Moved the Show/Hide Columns text onto the same line as the buttons, to save ↵ | zsloan | |
| a little vertical space | |||
| 2022-01-27 | Changed the glossary question mark to appear at the very end of the colum ↵ | zsloan | |
| text, in the hopes that this will show up normally for Rob | |||
| 2022-01-27 | Changed search result index column to be static (so it doesn't change when ↵ | zsloan | |
| the user sorts) | |||
| 2022-01-27 | Replaced the Select Top feature with one that functions more like the Block ↵ | zsloan | |
| By Index feature from the trait page; you can now use text indicating index ranges or specific indices, and the filter triggers on either hitting Enter or clicking outside of the text area | |||
| 2022-01-27 | Moved the Show/Hide Columns text before the column buttons to save vertical ↵ | zsloan | |
| space | |||
| 2022-01-27 | Reordered search result options as described in Rob's 1/19/2022 e-mail | zsloan | |
| 2022-01-27 | Make glossary link question marks italicized and red | zsloan | |
| 2022-01-27 | Made the search result table wider for genotype results, since previously ↵ | zsloan | |
| the Location text was being pushed to a second line (this was actually visible for me as well, not just Rob) | |||
| 2022-01-27 | Increased the width of the location columns a bit, since they were being ↵ | zsloan | |
| pushed onto a second line in some browsers (specifically Robs, but couldn't reproduce in mine, so I just changed it to something that should work for him) | |||
| 2022-01-27 | Replaced the info icon in the Peak LOD and Effect Size columns with a ↵ | zsloan | |
| superscript question mark, since the icon was appearing strangely in some browsers (namely Rob's) but in a while I couldn't reproducd | |||
| 2022-01-27 | Fix issue where Geno query was fetching from the chr_num column instead of ↵ | zsloan | |
| the Chr column (and the chr_num column isn't always populated for certain Genotype datasets) | |||
| 2022-01-27 | Increase Y of search result table to 1000px so more rows are visible without ↵ | zsloan | |
| scrolling | |||
| 2022-01-27 | This fixes an issue where you couldn't select more than 150-200 rows when ↵ | zsloan | |
| submitting search result traits to a collection; it previously just used JQuery and needed to be changed to use DataTables API to select from rows | |||
| 2022-01-26 | update live jupyter notebooks | jgart | |
| Removed bonface's notebook until seaborn gets fixed. | |||
| 2022-01-26 | wqflask: Ignore diffs with |ε| < 0.001 | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py (update_phenotype): Filter out values with |ε| < 0.001 when generating the diff file. | |||
| 2022-01-26 | user_login: Remove noisy debug statement | BonfaceKilz | |
| 2022-01-17 | update saunak's live jupyter notebook | jgart | |
| 2022-01-17 | update live jupyter notebooks | jgart | |
| 2022-01-11 | Removed the deferRender setting, since it appears to revent DataTables API ↵ | zsloan | |
| from being able to access all rows (which caused functions like Select All to only select the first 100-200 rows) | |||
| 2022-01-05 | metadata_edits.py: Remove duplicate imports | BonfaceKilz | |
| 2022-01-05 | Display correct message on the # of edits | BonfaceKilz | |
| 2022-01-05 | Insert data to db by checking the tracked deletions, mods, or adds | BonfaceKilz | |
| Prior to this, we only checked for the json files with contained the modifications. However, in the case of double deletions, and double inserts, the data would have been stored in the db anyway; which is a false representation of changes. | |||
| 2022-01-05 | Check for any double-inserts or double-deletions | BonfaceKilz | |
| Track any double-inserts or double-deletions | |||
| 2022-01-05 | Remove pudb debug statements | BonfaceKilz | |
| 2022-01-05 | metadata_edits: Return early if uploaded csv has not been edited | BonfaceKilz | |
| 2022-01-05 | display_diffs: Remove in-line styling from "pre" tag | BonfaceKilz | |
| 2022-01-05 | Remove pudb line | BonfaceKilz | |
| 2022-01-05 | display_diffs: Use datatables for every table | BonfaceKilz | |
| 2022-01-05 | Make "Files for approval:" text a "h2" | BonfaceKilz | |
| 2022-01-05 | Add interface for displaying diffs in a html page | BonfaceKilz | |
| 2022-01-05 | Use datatables to display approved and rejected files | BonfaceKilz | |
| 2022-01-03 | Added something that should work as a 'universal' solution for decoding ↵ | zsloan | |
| trait descriptions in search results, since there were still some traits with encoding issues | |||
| 2022-01-03 | Fixed wrong logic for checking for null or empty string trait descriptions ↵ | zsloan | |
| in search results | |||
| 2021-12-23 | If phenotype metadata is cached, authenticate for those traits (otherwise ↵ | zsloan | |
| authentication happens in create_trait at line 105) | |||
| 2021-12-23 | Set new_traits_metadata so caching is used (previously was always an empty dict) | zsloan | |
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