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2020-12-07Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-12-07Fixed issue where the correlation scatterplot link wasn't being displayed ↵zsloan
after the recent correlation table changes Fixed issue where the Sample p(r/rho) sort wasn't sorting using scientific notation, which resulted in the initial sort being bad
2020-12-07Changed the logic in create_trait so that permissions should always be set, ↵zsloan
and added an assert that 'name' is passed instead of using if/else, since it should always be passed
2020-12-06Add descriptive paragraph for svg graphBonfaceKilz
* wqflask/wqflask/templates/environment.html: New paragraph.
2020-12-06add pep8 formattingAlexander Kabui
2020-12-06modify tests for run_gemmaAlexander Kabui
2020-12-06Add svg graph of inputsBonfaceKilz
* wqflask/wqflask/markdown_routes.py: New import: "send_from_directory" (svg_graph): New function that adds route for svg_graph. * wqflask/wqflask/static/new/css/markdown.css: New style rules for svg graph. * wqflask/wqflask/templates/environment.html: Add new section for displaying svg graph.
2020-12-05Merge pull request #501 from Alexanderlacuna/bugfix/markdown-links-fixBonfaceKilz
Bugfix/edit button to actual markdown
2020-12-04Removed some logging statements from gemma_mapping.pyzsloan
2020-12-04Fixed issue where chromosome names weren't being fetched correctly, causing ↵zsloan
an error in GEMMA
2020-12-04Fixed typozsloan
2020-12-04Gave a margin to the More Options field so it doesn't look badzsloan
2020-12-04Limited the mean to 3 digits on correlation pagezsloan
2020-12-04Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵zsloan
bug/fix_correlation_export
2020-12-04Fixed correlation export to export table contents instead of using the same ↵zsloan
export as other trait tables (that exports data) Removed some unused imports
2020-12-04replace tree with blobAlexander Kabui
2020-12-04Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵Alexander Kabui
bugfix/markdown-links-fix
2020-12-04fix typo in wqflask/markdown_routes.pyAlexander Kabui
2020-12-04fix edit links to correct markdown pageAlexander Kabui
2020-12-04Merge pull request #497 from BonfaceKilz/feature/display-deps-from-guixBonfaceKilz
Feature/display deps from guix
2020-12-03Changed a lot of the logic related to highlighting rows and ↵zsloan
disabling/enabling the Add/Copy/Remove buttons to use DataTables API Moved change_buttons where it can be used outside of search_results.js
2020-12-03Fixed drawCallback for correlation page table and added the Invert buttonzsloan
2020-12-03Fixed drawCallback JS to work correctly and removed change_buttons function ↵zsloan
since it's now in search_results.js
2020-12-03Fixed View Collection table drawCallback to correctly deal with check boxes ↵zsloan
and the Copy/Delete buttons and fixed an issue where extra white-space on either side of the checkboxes was causing some JS to not work correctly
2020-12-04Display d3js chord dependency diagram of gn2 dependenicesBonfaceKilz
* wqflask/wqflask/markdown_routes.py: Add new bs4 import. (references): Filter out javascript from the guix-generated d3js html file and pass it to the jinja template. * wqflask/wqflask/static/new/css/markdown.css: New styles for the graph content. * wqflask/wqflask/templates/environment.html: New graph content.
2020-12-03Added Invert button to search result pagezsloan
2020-12-03Changed invert function to use DataTables API so it can also work with Scrollerzsloan
2020-12-03Fixed select_all and deselect_all to use DataTables API so they work with ↵zsloan
any tables that use Scroller
2020-12-03Converted the submit_traits_to_export_or_bnw function to using DataTables ↵zsloan
API, since the JQuery it was previously using didn't work with Scroller
2020-12-03Convert trait/dataset names to strings, since phenotype names were being ↵zsloan
treated as integers
2020-12-03Increased correlation table vertical height to 100vhzsloan
2020-12-03Center-align the table header and left-align the table bodyBonfaceKilz
2020-12-03Move css from environment.html to markdown.cssBonfaceKilz
2020-12-03Remove edit button in environments pageBonfaceKilz
* wqflask/wqflask/templates/environment.html: Delete edit button. The dependency file is autogenerated from guix.
2020-12-02Missed a syntax typo in last commitzsloan
2020-12-02Updated Funding line in search result exportzsloan
2020-12-02Added trait URLs to search page exportzsloan
2020-12-02Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-12-02Added index to search result exportzsloan
2020-12-02Merge pull request #498 from zsloan/bug/heatmap_fixzsloan
Made changes that should fix Heatmap errors + removed a console.log i…
2020-12-02Made changes that should fix Heatmap errors + removed a console.log in ↵zsloan
panelutil.js
2020-12-01Merge pull request #482 from zsloan/feature/corr_table_changeszsloan
Feature/corr table changes
2020-12-01Merge pull request #490 from zsloan/feature/filter_samples_by_valuezsloan
Feature/filter samples by value
2020-12-02Merge pull request #484 from Alexanderlacuna/test-regressionBonfaceKilz
Add tests for marker_regression
2020-12-01Fetch file from systempath when loading "/environments" routeBonfaceKilz
* wqflask/wqflask/markdown_routes.py: (render_markdown): Extend function to check whether "file_name" is to be fetched remotely or locally in syspath. (environments): Extend route to fetch from syspath if dependency file exists there; otherwise fetch remotely from Github as a fallback.
2020-12-01Add new function to fetch md file from sys pathsBonfaceKilz
* wqflask/wqflask/markdown_routes.py: New imports. (get_file_from_python_search_path): New function.
2020-12-01Remove stale commentBonfaceKilz
2020-11-28modify test for plink mapping and rqtl_mappingAlexander Kabui
2020-11-27move tests to unit folderAlexander Kabui
2020-11-27Merge pull request #492 from Alexanderlacuna/feature/add-markdown-pagesBonfaceKilz
Feature/add markdown pages
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