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2016-06-21Benchmarking: allow output select with LOG_BENCHPjotr Prins
2016-06-21Logger: SQLPjotr Prins
2016-06-19gn_server: Species info can be fetched from gn_serverPjotr Prins
2016-06-19gn_server: SQL handlingPjotr Prins
2016-06-19Logger: started logging SQLPjotr Prins
2016-06-19logger: adding functionality for SQLPjotr Prins
views.py: simplified code
2016-06-19views.py: remove commented stuffPjotr Prins
2016-06-19Renamed settings so they are grouped togetherPjotr Prins
2016-06-18Logger: changed levelPjotr Prins
2016-06-18Logger: create stub so we can have multiple arguments to log functionsPjotr Prins
2016-06-18Logging settingsPjotr Prins
2016-06-18LoggerPjotr Prins
2016-06-18Documented loggerPjotr Prins
2016-06-18Runner: updated infoPjotr Prins
2016-06-18Logger: more infoPjotr Prins
2016-06-18Logger: replacing print statementsPjotr Prins
2016-06-18Logger: introducing loggingPjotr Prins
2016-06-18Logging: behavioursPjotr Prins
2016-06-18Logger: improving outputPjotr Prins
2016-06-18Changed file permssions to non-executablePjotr Prins
2016-06-18Disable setting sys.pathsPjotr Prins
2016-06-18Logger: introducing loggingPjotr Prins
2016-06-17ConflictPjotr Prins
2016-06-17Removed trailing spaces in .py and .js filesPjotr Prins
2016-06-16Introduce behaviour parameters to facilitate developmentPjotr Prins
2016-06-16Generating the menu is now obsoletePjotr Prins
2016-06-16Menu: removing outdated .coffee file and commentsPjotr Prins
2016-06-16Menu: removed one item from JSONPjotr Prins
2016-06-16Menu: indentationPjotr Prins
2016-06-16Menu: simplifying JSON objectPjotr Prins
2016-06-16Menu: refactoring scoped varsPjotr Prins
2016-06-16Menu: jdata is no longer usedPjotr Prins
2016-06-16Menu: populate datasets dropdownPjotr Prins
2016-06-15Menu: populating tissue from RESTPjotr Prins
2016-06-15Menu: refactoring code, handling errorPjotr Prins
2016-06-14Added y axis line to probability plot and bar chartzsloan
Automatically determines number of decimal places to show on y axis of probability plot; still need to figure out how to do it with bar chart Added some logging to figure out MySQL connection issue
2016-06-14Menu: fetch group info from serverPjotr Prins
2016-06-14Make species section in data structurePjotr Prins
2016-06-14Menu: fetch species from gn_serverPjotr Prins
2016-06-07R/qtl pair scan now works again, though it takes a while (10-15 minutes).zsloan
Added pop-up warning user about run-time for pair scan Fixed links to GN2 github on the index page Fixed a couple issues with the search result page text Changed the appearance of the trait sample data table to match other tables (darker headers, etc)
2016-06-03Made a bunch of changes to correlation and search result tables (mainly the ↵zsloan
former) and made all tables a little more compact by lessenning the padding
2016-06-03Changed appearance of tables to more easily differentiate them from the rest ↵zsloan
of the page (still not totally pleased with them though) Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A.
2016-06-02Fixed some issues with global search result tables, including:zsloan
- Wrong digits for mean expression and additive effect - Bad loooking width on some columns, like Max LRS Location - Janky functionality for column resizing and drag-and-dropping (just disabled these functions) - Geno and Pheno global search tables weren't built in the same way, so now they are I also fixed the sorting to always put N/A's at the bottom of the table by editing naturalSort.js
2016-06-01Changed global gene search to no longer use server-side processingzsloan
2016-05-31Fixed error when MrnaAssay search results didn't have a geneidzsloan
2016-05-31Renamed TEXTDIR to GENERATED_TEXT_DIRPjotr Prins
2016-05-31Allow the json dir to be in the old location.Pjotr Prins
2016-05-27Fixed issue where the Non-BXD (or whatever group/inbred set) table would ↵zsloan
show up when there should be no such samples Fixed Interquartile Range link in basic statistics table
2016-05-27Improved appearance of p values below slider in correlation menu on trait ↵zsloan
page. The way I did it is really awful (a bunch of  's) but nothing else seemed to work, including putting a div or span with a fixed width between them
2016-05-26Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
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