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2021-07-12templates: edit_probeset: Add template for editing probeset dataBonfaceKilz
* wqflask/wqflask/templates/edit_probeset.html: New file(template).
2021-07-12wqflask: views: Add extra route showing probeset editing formBonfaceKilz
* wqflask/wqflask/views.py (edit_probeset): New function/ route.
2021-07-12wqflask: views: Rename endpoint for editing a traitBonfaceKilz
* wqflask/wqflask/views.py (edit_trait): Rename to edit_phenotype. Also rename the endpoint to "/trait/<name>/edit/inbredset-id/<inbred_set_id>" to indicate that and inbredset-id is required. This endpoint will be only used for phenotypes. Finally, render the "edit_phenotype.html" template (update_trait): Rename to update_phenotype. Also, remove hard-coded redirect, and replace it with the correct values. * wqflask/wqflask/templates/edit_trait.html: Rename to edit_phenotype.html
2021-07-09Merge branch 'testing' into feature/use_gn3_for_correlationszsloan
2021-07-09Remove commented out function do_bicorzsloan
2021-07-09Only show literature and tissue correlation options if the trait's dataset ↵zsloan
is type ProbeSet
2021-07-09Changed compute_corr_for_top_results to also do sample correlation when ↵zsloan
literature or tissue correlation are selected
2021-07-03Increased width of mapping options div and covariates windowzsloan
2021-07-01Fixed issue with suggestive/significant lines extending beyond figure edge + ↵zsloan
fixed a couple issues with the last commit
2021-07-01Fixed issue where the interval map QTL line might extend beyond the graph ↵zsloan
edge when zoomed into a Mb range + removed some commented out code
2021-07-01Fixed issue where zooming into chromosome 1 was causing the Y axis scaling ↵zsloan
to be bad
2021-07-01Fixed bug where there'd be an error if the max boot count is 0 for a chromosomezsloan
2021-06-21Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-06-18Changed limit from 2000 markers to 10000 markers for the number to show in ↵zsloan
mapping results table
2021-06-18Added Scroller to mapping results tablezsloan
2021-06-18Re-enable bicor as an option in the trait page templateezsloan
2021-06-18Reenable PCA for correlation matrixzsloan
2021-06-18Re-enable bicor for correlations and fix issue where ro.Vector needed to be ↵zsloan
changed to ro.FloatVector
2021-06-17The listserv link was marked as broken but is working, so I made it a link ↵zsloan
again, but the IRC channel link is broken so I marked it as broken
2021-06-17UCSC Genome Browser link was marked as a broken link, but it apparently ↵zsloan
works now so I added it back as a link
2021-06-17Only show all-numerical attributes in the 'Filter samples by value' drop-downzsloan
2021-06-17Added function for getting list of attributes with all numerical values ↵zsloan
(that can be used with the 'Filter by value' feature)
2021-06-17Fixed issue that caused filtering by attribute values to not work if ↵zsloan
attribute values didn't exist for some samples
2021-06-17delete loggers and commentsAlexander Kabui
2021-06-17add f1list and parlist to primary_samplesAlexander Kabui
2021-06-17minor refactoringAlexander Kabui
2021-06-17sort sample name by sample_idsAlexander Kabui
2021-06-17remove print statementsAlexander Kabui
2021-06-17remove unused functions + minor fixesAlexander Kabui
2021-06-17minor fixAlexander Kabui
2021-06-17pep8 formattingAlexander Kabui
2021-06-17add query for fetching probeset dataAlexander Kabui
2021-06-17delete loggers and commentsAlexander Kabui
2021-06-17add f1list and parlist to primary_samplesAlexander Kabui
2021-06-17minor refactoringAlexander Kabui
2021-06-17sort sample name by sample_idsAlexander Kabui
2021-06-17remove print statementsAlexander Kabui
2021-06-17remove unused functions + minor fixesAlexander Kabui
2021-06-17minor fixAlexander Kabui
2021-06-17pep8 formattingAlexander Kabui
2021-06-17add query for fetching probeset dataAlexander Kabui
2021-06-16Fixed reference to target_trait['lrs_location'] that should have been ↵zsloan
target_trait['location'] for correlations against genotypes
2021-06-16Changed the function jsonable in trait.py to return a couple extra fields + ↵zsloan
take dataset as an optional argument (to avoid having to pointlessly create it)
2021-06-16Added function as_dict to data_set.py for situations where we don't want to ↵zsloan
pass around the whole dataset object
2021-06-16Changed set_other_template_vars to set_template_varszsloan
2021-06-16Rewrote show_corr_results.py to remove all code calculating correlations ↵zsloan
(that was moved to correlation_gn3_api.py, which will probably be renamed at some point) and only include the code generating the table JSON and some template variables
2021-06-16Added compute_all as parameter to compute_correlation and keyword arguments ↵zsloan
to docstring
2021-06-16Changed correlation page template to account for differences in the output ↵zsloan
returned from the GN3 API correlation code
2021-06-16Changed views.py to call the correlation code using the GN3 API + a function ↵zsloan
in show_corr_results for setting other template vars (might change this later)
2021-06-15Use markdown from Github for Newszsloan
generated by cgit v1.2.3 (git 2.44.0) at 2024-12-17 10:03:02 +0000