genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2013-01-11	Commented out import of rpy2 in correlationFunction.py due to	Zachary Sloan
2013-01-11	Upgraded packages requirements.txt but haven't tested	Zachary Sloan
2013-01-11	Overwrote requirements.txt	Zachary Sloan
2013-01-11	Trimmed a bunch of code off of marker_regression.py	Zachary Sloan
2013-01-10	Checking in before we try to write our own code for the manhattan	Zachary Sloan
2013-01-10	Checking in before trying to put manhattan plot sections closer together	Zachary Sloan
2013-01-10	Normalized the y axis for each manhattan plot section	Zachary Sloan
2013-01-10	The plots now correctly appear above/below each other.	Zachary Sloan
2013-01-10	Edited marker_regression.coffee to make every sub-manhattan plot	Zachary Sloan
2013-01-10	Made Chromosome class in marker_regression.coffee; current	Zachary Sloan
2013-01-10	Made x-axis values into ints; committing before trying to add multiple graphs	Zachary Sloan
2013-01-10	Worked with the manhattan plot coffeescript to set x-axis and change	Zachary Sloan
2013-01-09	Manhattan plot results are appearing correctly for chromosome 1	Zachary Sloan
2013-01-09	The histogram coffeescript is now in its own class and the graph	Zachary Sloan
2013-01-09	Checking in before putting the histogram coffeescript into its own	Zachary Sloan
2013-01-09	More or less finished the permutation histogram	Zachary Sloan
2013-01-09	Got the permutation plot working as a line plot; still need to make	Zachary Sloan
2013-01-09	jqplot added	Zachary Sloan
2013-01-09	Got the marker regression page to display again	Zachary Sloan
2013-01-08	js_data is being printed out (seemingly) correctly now for the	Zachary Sloan
2013-01-08	Created IndChromosome class in species.py and wrote functions for	Zachary Sloan
2013-01-08	Deleted some unnecessary code in marker_regression.py and fixed some bugs	Zachary Sloan
2013-01-04	Continued rewriting marker_regression.py code	Zachary Sloan
2013-01-04	Correct results are being returned from reaper for the marker regression page	Zachary Sloan
2013-01-03	Began working on marker_regression.py and created Chromosomes class	Zachary Sloan
2013-01-03	marker_regression page is up again	Zachary Sloan
2013-01-03	Created template for marek regression page and made the compute button direct	Zachary Sloan
2012-12-20	Changed layout of marker regression options	Zachary Sloan
2012-12-20	The control locus field in the interval mapping settings is now disabled if	Zachary Sloan
2012-12-20	Made composite mapping options show/hide for the interval mapping section	Zachary Sloan
2012-12-20	More changes to the layout of interval mapping options	Zachary Sloan
2012-12-20	Continued to customize the interval mapping menu	Zachary Sloan
2012-12-20	Improved appearance/layout of the interval mapping tab using bootstrap	Zachary Sloan
2012-12-20	Form data passed via POST for marker regression	Zachary Sloan
2012-12-18	Changed html for the marker regression tab	Zachary Sloan
2012-12-18	Created new file species.py and species class object TheSpecies	Zachary Sloan
2012-12-07	Got links working for statistics table labels	Zachary Sloan
2012-12-07	Got basic statistics in show_trait to display the correct number	Zachary Sloan
2012-12-07	Got show_trait page to appear again for phenotype traits	Zachary Sloan
2012-12-06	All 10 stats working	Zachary Sloan
2012-12-06	Continued work on basic statistics table in show_trait	Zachary Sloan
2012-12-06	Added minimum/maximum to basic statistics table	Zachary Sloan
2012-12-06	Got show_trait running again for MrnaAssay traits	Zachary Sloan
2012-12-06	Made many small changes to show_trait/data_set/search_results/trait to	Zachary Sloan
2012-12-05	Renamed webqtlTrait.py to trait.py	Zachary Sloan
2012-12-05	Continued to make changes related to getting rid of cursor/db_conn	Zachary Sloan
2012-12-04	Changed parser to allow quotes (i.e. name="rw williams")	Zachary Sloan
2012-12-04	Began changing references to cursor/db_conn to use sqlalchemy	Zachary Sloan
2012-11-30	Added example of escaping strings now that trasitioning to simple SQLAlchemy	Zachary Sloan
2012-11-30	Started switching to using basic sqlalchemy to handle db connection/queries	Zachary Sloan