Age | Commit message (Expand) | Author |
2017-06-12 | Merge branch 'development' of github.com:genenetwork/genenetwork2 into develo... | zsloan |
2017-06-12 | Added explanatory text to heatmap page | zsloan |
2017-06-12 | Fix binary paths for GEMMA_COMMAND, PYLMM_COMMAND and PLINK_COMMAND | Pjotr Prins |
2017-06-12 | Fixed issue where 0.0 values would be converted into X's on the trait page | zsloan |
2017-06-09 | Merge /home/staging/gene into development | zsloan |
2017-06-09 | - Changed the way the genofile is set so different genofiles can be selected ......- Now shows error page for Correlation Matrix if traits aren't all from the same group (later need to make it check for shared samples, since different groups may contain some of the same samples
- Mapping results page now displays the genofile in the information section
- Only show Interval Analyst if species is mouse or rat (previously it would show a blank table for other species)
- Network Graph now only shows links in a node's info if the relevant information (for example geneid) exists, and the label changes depending on the type of data set
- Other minor changes to the appearance of the Network Graph menu (less white space, plus clickable descriptions for a couple options)
- Improved Correlations Results page to shorten Description and Authors cell content for Phenotype traits (to keep table width manageable)
- Changed the glossary links for LRS and Additive Effect columns for Gene Global Search
- Improved appearance for Phenotype Global Search results
- Temporarily removed Mapping options/features that don't work from the trait page
| zsloan |
2017-06-02 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan |
2017-06-02 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan |
2017-06-02 | settings: do not enforce JS paths | Pjotr Prins |
2017-05-31 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan |
2017-05-31 | Added various tool options to correlation results page and improved table app......Fixed minor logic issue in trait.py
| zsloan |
2017-05-31 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan |
2017-05-31 | JS_GUIX_PATH may not be there | Pjotr Prins |
2017-05-31 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan |
2017-05-31 | JS module handling | Pjotr Prins |
2017-05-22 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan |
2017-05-22 | Added submit trait to header menu and fixed some minor issues with Network Gr... | zsloan |
2017-05-22 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan |
2017-05-22 | Added print lines showing url to views.py and updated dataset menu json file | zsloan |
2017-05-21 | Merge from the diet branch.... * refactored ./bin/genenetwork2 and /etc/default_settings
- better detection of Guix
- removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS
- removing some default settings, such as PYLMM_COMMAND
- rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY
- added GUIX_JS_PATH for JS modules
* Added documentation on installing binary GN2
* Updated Twitter board to latest version in Guix - it had broken
* Updated many tools in the latest Guix profile
| Pjotr Prins |
2017-05-16 | Fixed issue that caused mapping to not work for R/qtl...Updated dataset menu dropdown info
Began adding option to download statistics figures as PNG
| zsloan |
2017-05-08 | corr_scatter_plot update (use nvd3) | Lei Yan |
2017-05-04 | renamed: gn2_lei.conf -> gn2-lei.conf | Lei Yan |
2017-05-04 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Lei Yan |
2017-04-25 | Fixed issue with correlation result trait links if target dataset is differen......Improved collection list and view table appearances
Added question mark image for glossary entries in table headers
Fixed issue where extra decimal place sometimes appeared in bar chart Y axis tick values
| zsloan |
2017-04-17 | Added option to remove collections from collection list page...Improved appearance of search result and collection tables
| zsloan |
2017-04-06 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Lei Yan |
2017-04-05 | Added images directory with various gifs, etc | zsloan |
2017-04-05 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into development | zsloan |
2017-04-05 | - Temporary traits can be created, viewed, and added to collections...- Correct PCA trait data is created but can't be saved yet
- Added inner margins by increasing xDomain and yDomain of probability plot on trait page
- Increased X/Y-axis label font size
- Turned "processes" to 0 on runserver.py for PROD setting, since it doesn't work with threading
- Improved appearance of correlation page table
- Added links to github to index page
- Removed js_data from GEMMA/PLINK mapping results, since it isn't used for those
- Removed "Tissue" from trait page for phenotype traits
| zsloan |
2017-04-04 | Change scatterplot title font size | Lei Yan |
2017-04-04 | Change scatterplot image buffer/inner | Lei Yan |
2017-04-04 | align X and Y meta info | Lei Yan |
2017-03-30 | Change "Correlation Scatterplot" size, font, color, etc. | Lei Yan |
2017-03-16 | Merge /home/zas1024/gene | Lei Yan |
2017-03-16 | Add meta info (X axis, Y axis) for Correlation Scatterplot | Lei Yan |
2017-02-09 | Fixed issue where I forgot to add GeneticType to the query_for_group query fo......Increased digits of some Basic Statistics values from 2 to 3
| zsloan |
2017-02-09 | Changed second column header to 'Value' when there's only one sample group | zsloan |
2017-02-09 | Added genetic_type to DatasetGroup object to differentiate between which grou......Minor changes/improvements for trait page
Updated dataset_menu_structure.json
| zsloan |
2017-02-08 | Changed the way .fam files are written/read, which fixes the issue with GEMMA... | zsloan |
2017-02-06 | Mapping results figure now correctly says whether GEMMA was used as mapping m... | zsloan |
2017-02-06 | Merge branch 'development' of github.com:zsloan/genenetwork2 | zsloan |
2017-02-06 | Commented out reference to trait_submission since it's not used yet | zsloan |
2017-02-06 | Merge branch 'master' of github.com:zsloan/genenetwork2 | zsloan |
2017-02-06 | Fixed appearance of several tables (search, mapping results, sample data)...Temporarily removed second sample table for CFW traits
Fixed location of global search bar to work with wider screens
| zsloan |
2017-02-02 | Merge /home/zas1024/gene | Lei Yan |
2017-01-26 | Merge pull request #1 from genenetwork/testing...Various changes/fixes | zsloan |
2017-01-26 | GEMMA now works with CFW data (had to update where it looks for the input fil......Y-axis for GEMMA now says -log(p)
Updated the style of the trait sample data table in the trait page
Updated dataset_select_menu_orig.js to also build just the Species and Group drop-downs for the trait input page (as opposed to all 4 drop-downs)
Updated dataset menu json file
Added option to show and hide columns to regular search page using colVis
Changed regular and global search result table styles/column widths
Began work on user trait submission code (not working yet though)
Began work on static loading page for mapping results
| zsloan |
2017-01-03 | Fixed appearance of samples tables in show_trait to look like all the other t......Disabled sorting for the first column (check box) of the samples tables
| zsloan |
2016-12-15 | Merge pull request #234 from zsloan/master...Various changes | zsloan |