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2013-09-24Did some work towards doing the tissue correlation for all traits...in a dataset (in order to sort by tissue correlation instead of sample correlation). root
2013-09-24before deleting more of the security flask stuffSam
2013-09-24Just committing a few additions to the interval mapping codeZachary Sloan
2013-09-24Fixed the db_tools import in mrna_assay_tissue_data.py...Added file for the interval mapping page and wrote code that gets/sets some parameters Zachary Sloan
2013-09-20Tissue correlation results work for sample r/rho correlation page...and are written to the template Lei Yan
2013-09-13Merge /home/lei/geneZachary Sloan
2013-09-13Added file that will convert genofiles to plink ped/map filesZachary Sloan
2013-09-13Merge https://github.com/zsloan/genenetwork...Resolved conflicts: wqflask/base/trait.py wqflask/wqflask/correlation/correlationFunction.py wqflask/wqflask/correlation/correlation_function.py wqflask/wqflask/correlation/correlation_functions.py wqflask/wqflask/correlation/show_corr_results.py Lei Yan
2013-09-06Registration form validaiton without js worksSam
2013-09-05Missed some files in last checkin so adding them nowSam
2013-09-05Switched registration form to no longer be modal, but instead it's own page...Added validation of form using parsley.js Added password strength indicator using zxcvbn Sam
2013-09-05Adjusting to using our own registariton packageSam
2013-09-04Trying to trace through filesSam
2013-08-28Various changes to track down what happens with security modulesSam
2013-08-23Finally figured out where to put flask_security into the code...Various registration template changes Sam
2013-08-23Working on user registration and added nginx conf for my branchSam
2013-08-21Fixed an issue where correlationFunction was being imported...instead of its updated name correlation_function Zachary Sloan
2013-08-21Just removed a couple print statementsZachary Sloan
2013-08-15Removed the markers with no variance (and thus no p-values) from the...manhattan plot Zachary Sloan
2013-08-14Merge branch 'master' of https://github.com/zsloan/genenetworkZachary Sloan
2013-08-14Made some changes related to getting marker regression working for...some datasets Zachary Sloan
2013-08-14Removed some duplicate files in the maintenance folderZachary Sloan
2013-08-13Added several test files and the file with the class that...they import (browser_test.py) Zachary Sloan
2013-08-08Fixed issue where points in marker regression manhattan plot...weren't positioned on the x-axis Zachary Sloan
2013-08-07Fixed things with the dataset dropdowns and mRNA datasets...Improved the templates for a couple pages related to changing user password, etc Zachary Sloan
2013-08-02Fixed a bug related to groups with genofiles (not sure if it makes sense...for them not to have genofiles yet) Zachary Sloan
2013-07-30Just added some print statements to debug an issue with LMM code...Also added some to notes Zachary Sloan
2013-07-23Fixed a couple issues with he quick_search_table.py script...Added notes on using percona to optimise mysql to gn_installation_notes.txt Started moving "get_trait_data" to DataSet since it is the same regardless of the particular DataSet subclass (PhenotypeDataSet, MrnaAssayDataSet, etc) Zachary Sloan
2013-07-19Finished integrating code that reads sample list from geno files...withouot using reaper and caches results so it doesn't need to read the file every single time someone loads a page Zachary Sloan
2013-07-19Created file gen_group_samplelists that iterates through all genofiles...and builds each groups' samplelist Zachary Sloan
2013-07-18Added Amelie's rat data genotypes...Got human mapping mostly working Fixed dataset dropdown menus Zachary Sloan
2013-07-18Merge branch 'master' of https://github.com/zsloan/genenetwork...Conflicts: wqflask/base/webqtlConfigLocal.py wqflask/maintenance/gen_select_dataset.py wqflask/wqflask/static/new/javascript/dataset_menu_structure.json Zachary Sloan
2013-07-18Added to installation notes...Removed webqtlConfigLocal file containing passwords Updated main page dropdown menus (dataset_menu_structure.json) Zachary Sloan
2013-07-17Fixed gen_select_dataset.py...Appended redis installation info to notes Zachary Sloan
2013-07-16Merge branch 'master' of https://github.com/zsloan/genenetwork...Conflicts: misc/gn_installation_notes.txt Zachary Sloan
2013-07-16Wrote code that can get a dataset's type for every single GN...dataset; previously we could not view traits in datasets that were not in the DBType table in the database Zachary Sloan
2013-07-12Rewrote code related to getting the tissue correlation column to display...Created new files for mrna assay tissue data and commonly used db query related functions Lei Yan
2013-07-11Began changing the style of the code related to the tissue correlation column...of the correlation page Lei Yan
2013-07-10Updated gn_installation_notesZachary Sloan
2013-07-09Committing installation notes before editing them moreZachary Sloan
2013-07-05Change Correlation table value formatLei Yan
2013-07-03Updated notes and created requirements.txt fileZachary Sloan
2013-07-03Merge /home/zas1024/geneLei Yan
2013-07-03Made the table in the group manager sortable, etcZachary Sloan
2013-06-27Created a group manager page where user administrators can create...groups of datasets to give/add read privileges to Zachary Sloan
2013-06-27Fixed N Cases column on correlation results pageLei Yan
2013-06-26Merge /home/sam/geneZachary Sloan
2013-06-26More signin changesSam
2013-06-26Moved code creating DataSets object to a function in dataset.py...Added caching to creating DataSets object Zachary Sloan
2013-06-26Got code that creates DataSets object running...Fixed one genofile that had extra quotation marks in the comments that caused an error Defaults mb_graph_interval to 1 for species without chromosome lengths in megabases Zachary Sloan
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