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Added GEMMA and necessary plink-format genotype files in gemma directory
Added the GEMMA genotype files to git LFS
Removed some unnecessary/duplicated code from interval_mapping.py
Separated GEMMA mapping code into its own file (will also do this for other methods) and fixed
and issue that caused it to not run
Added the table to the pair scan results page and wrote some code adding its attributes
to each marker object, but it still isn't working yet
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where rat trait pages wouldn't work
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new code
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Pjotr's latest changes
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Removed the SharingPage import from views since it doesn't exist anymore
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0.50-gn2-pre1
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but I should note that a couple of them were changed from GN1; I think that there
was some attempt to implement this very early into GN2's development, but
we'd probably be better off starting from scratch since a number of
things have changed since then (such as the way we call queries)
Removed the Singapore link from the mirrors section of the index page since
it wasn't working
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TemplatePage
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it used to point to the now-renamed 'web' directory). It obviously also needs to be renamed later, but I'll have to find every place that calls webqtlConfig.HTMLPATH first to do so.
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directory to 'genotype_files'
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other files
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external settings
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removed in the history), this should not be here since its a dependency not code we want to maintain ourselves
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choose to use non-parametric QTL mapping, binary phenotypes, etc
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Conflicts:
wqflask/wqflask/my_pylmm/pyLMM/lmm.py
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