| Age | Commit message (Expand) | Author |
|---|
| 2021-09-29 | test template for gn3 wgcna | Alexander Kabui |
| 2021-09-27 | Apply pep-8 formatting | BonfaceKilz |
| 2021-09-27 | Remove variable-- named after a python keyword-- called "list" | BonfaceKilz |
| 2021-09-27 | Remove lengthy stack trace for 404, 400, 408 status codes...The stack trace causes the log file to grow into unmanageable sizes
over time.
| BonfaceKilz |
| 2021-09-25 | Add progress indicator. Handle errors....Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Add a progress indicator to show the user that there is some
progress happening, so that they can wait.
Add a function to handle any errors that arise.
| Frederick Muriuki Muriithi |
| 2021-09-25 | Remove hard-coded URL; use configured URL...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* etc/default_settings.py: remove duplicate configuration variable
* wqflask/wqflask/collect.py: use the configured url for the API
server
Use the configured URL rather that the hard-coded URL that was used
for testing out the clustered heatmap generation.
| Frederick Muriuki Muriithi |
| 2021-09-23 | Clear any existing image on subsequent clicks...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* If the user clicks on the "Clustered Heatmap" button, the system
should remove any previously existing clustered heatmap image and
replace it with the new image.
| Frederick Muriuki Muriithi |
| 2021-09-23 | Move the heatmap display area to before the table...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Move the heatmap area to before the data table, so that once the
heatmap is generated, it shows up before the table, and the user is
able to see what happened.
| Frederick Muriuki Muriithi |
| 2021-09-22 | Removed the Control for (marker) option from R/qtl for now since Danny mentio... | zsloan |
| 2021-09-22 | Fixed issue where the control marker parameter was being passed incorrectly t... | zsloan |
| 2021-09-22 | Only show most search page options if results exist; otherwise provide a link... | zsloan |
| 2021-09-22 | Added type='button' to the Delete Collection button within collections/view, ... | zsloan |
| 2021-09-22 | Remove references to reaper_version and code for running old qtlreaper | zsloan |
| 2021-09-22 | Cleanup code...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Remove unnecessary console.log(...) statements that were used in
development
* Re-arrange the html elements
* Rename element id
| Frederick Muriuki Muriithi |
| 2021-09-22 | Test heatmap creation from serialized figure...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Attempt using the figure, serialized as JSON, to display the
clustered heatmap.
| Frederick Muriuki Muriithi |
| 2021-09-20 | Returned the GN1 url to gn1.genenetwork.org since it's apparently working wel... | zsloan |
| 2021-09-20 | Removed the reaper_version selection option, since original qtlreaper is no l... | zsloan |
| 2021-09-20 | Added back the option to edit privileges on trait pages, since the metadata e... | zsloan |
| 2021-09-20 | Prevent the default submit action...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Prevent the default submit action.
| Frederick Muriuki Muriithi |
| 2021-09-20 | Fix id used. | Frederick Muriuki Muriithi |
| 2021-09-20 | Move "Clustered Heatmap" button to separate form...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Move the button out of the "export_form" into a new "heatmaps_form"
to avoid some weird JS interaction that showed up.
| Frederick Muriuki Muriithi |
| 2021-09-20 | Implement proof-of-concept code to submit data...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Implement some javascript to activate the "Clustered Heatmap"
button.
This commit provides a proof-of-concept implementation to help with
identifying the requirements for sending and receiving of the
heatmaps data.
| Frederick Muriuki Muriithi |
| 2021-09-20 | Provide UI elements for clustered heatmap generation...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* wqflask/wqflask/collect.py: provide hard-coded URL for testing
* wqflask/wqflask/templates/collections/view.html: provide button
Provide a button to trigger the heatmap generation. As a test, we
also provide a hard-coded URL for the API endpoint to get the
heatmap data.
| Frederick Muriuki Muriithi |
| 2021-09-16 | wqflask: views: Redirect to the correct URL after phenotype update | BonfaceKilz |
| 2021-09-14 | Replace / with _ in the mapping results filename, due to / causing issues wit... | zsloan |
| 2021-09-14 | Replace / with _ in the file hashes in rqtl_mapping.py, since they get transl... | zsloan |
| 2021-09-13 | Change mapping export filename to use the path passed from run_mapping, inste... | zsloan |
| 2021-09-13 | Change mapping export filename to use the trait hash | zsloan |
| 2021-09-13 | Add trait name and trait hash to exported mapping results | zsloan |
| 2021-09-13 | Include some extra metadata in the mapping page details (in addition to the f... | zsloan |
| 2021-09-13 | Change Genotype File text to only show the meaningful genotype deescription | zsloan |
| 2021-09-13 | Temporarily point the View in GN1 button to gn1-lily.genenetwork.org since so... | zsloan |
| 2021-09-11 | Add Jupyter Notebook Launcher to Tools dropdown menu | jgart |
| 2021-09-10 | Fix issue with the way the template was checking if genofile_string was set; ... | zsloan |
| 2021-09-10 | Removed encoding, since it's apparently not needed since the Python 3 switcho... | zsloan |
| 2021-09-09 | Change trait name to display name in the metadata at the top of the page (so ... | zsloan |
| 2021-09-09 | Replaced trait name with trait display name in display_mapping_results so the... | zsloan |
| 2021-09-07 | Add trait hash and datetime to mapping figure | zsloan |
| 2021-09-07 | Add timer to loading page to track how long the process has been running | zsloan |
| 2021-09-05 | Fixed issue that caused sample data to not be fetched correctly; there's some... | zsloan |
| 2021-09-03 | Allow categorical_var_list to be passed as a template variable | zsloan |
| 2021-09-03 | Fix issue that caused javascript to not work on the R/qtl mapping result page... | zsloan |
| 2021-09-03 | Fix issue where values written to phenotype file for R/qtl sometimes had trai... | zsloan |
| 2021-08-25 | Fix issue where correlation results weren't included parents/f1s | zsloan |
| 2021-08-25 | Fixed issue in get_diff_of_vals that caused the diff to be calculated wrong (... | zsloan |
| 2021-08-25 | Add map scale option that was missing for groups with only a single genotype ... | zsloan |
| 2021-08-25 | Fix issue that could cause an error when doing cM mapping | zsloan |
| 2021-08-25 | Fix issue that could cause mapping_scale to not be set correctly in show_trai... | zsloan |
| 2021-08-23 | Removed unused variable from list of 'wanted' variables for mapping | zsloan |
| 2021-08-23 | Fixed issue with the way categorical_vars and perm_strata were being passed t... | zsloan |
