| Age | Commit message (Expand) | Author |
|---|
| 2016-04-26 | Merging with Zach's latest branch | Pjotr Prins |
| 2016-04-25 | Interval Analyst table mostly working, just need to work out a few more things | zsloan |
| 2016-04-22 | Fixed issue where manhattan plot setting wasn't being carried over to single ...•••Removed a useless "if 1 == 1" line that was in marker_regression_gn1.py for testing.
| zsloan |
| 2016-04-20 | Interval Mapping now correctly does interval mapping if Marker Regression isn...•••Changed "Manhattan Plot" label to "Marker Regr." to accurately reflect what the option does
| zsloan |
| 2016-04-20 | Added borders to stats table in trait page | zsloan |
| 2016-04-20 | Fix typo | Pjotr Prins |
| 2016-04-20 | A few fixes to get the webserver running again | Pjotr Prins |
| 2016-04-20 | Add file | Pjotr Prins |
| 2016-04-20 | trasnform to transform | DannyArends |
| 2016-04-20 | Changed the file stem of generated pictures to CTL | DannyArends |
| 2016-04-20 | Adding small figures per trait, so that users can see CTL and QTL for each in... | DannyArends |
| 2016-04-20 | Adding parameters, and passing them to the CTL algorithm | DannyArends |
| 2016-04-20 | Working on the output template of CTL | DannyArends |
| 2016-04-20 | Updates to the CTL code adding the significant results to the result object | DannyArends |
| 2016-04-20 | Cleaning code, adding comments | DannyArends |
| 2016-04-20 | Adding the lineplot image to the output | DannyArends |
| 2016-04-20 | Adding code to do initial CTL mapping (working on the BXD) | DannyArends |
| 2016-04-20 | Parsing the names of the individuals, and coding H as -999 | DannyArends |
| 2016-04-20 | Minor changes to the CTL setup template | DannyArends |
| 2016-04-20 | Using the geno parser to get/parse the genotypes for the dataset | DannyArends |
| 2016-04-20 | Adding the geno file parser from Zach | DannyArends |
| 2016-04-20 | Creating the analysis object and passing results to the results template | DannyArends |
| 2016-04-20 | [PATCH 082/100] Testing passing information between the templates | DannyArends |
| 2016-04-20 | Loading the library and mapping the scan function | DannyArends |
| 2016-04-20 | Connecting the CTL analysis to the collection overview, by adding a button | DannyArends |
| 2016-04-20 | Adding initial file to perform CTL analysis | DannyArends |
| 2016-04-20 | [PATCH 078/100] Adding empty templates for CTL in GN2 | DannyArends |
| 2016-04-20 | Cleaning up the WGCNA parameter input template | DannyArends |
| 2016-04-20 | [PATCH 061/100] Put R/qtl .cross file in TMPDIR | Pjotr Prins |
| 2016-04-20 | Show error when GENODIR is missing | Pjotr Prins |
| 2016-04-20 | Remove dbdoc | pjotrp |
| 2016-04-20 | Removed symlinks | pjotrp |
| 2016-04-20 | r-wgcna: Fix paths | pjotrp |
| 2016-04-20 | More hard-coded | pjotrp |
| 2016-04-20 | [PATCH 050/100] Using out-of-tree storage. Added comments for plink,••• gemma.
| Pjotr Prins |
| 2016-04-20 | [PATCH 049/100] SNP_PATH: removal | Pjotr Prins |
| 2016-04-20 | [PATCH 047/100] This commit moves the image generation dir *outside* the git ... | Pjotr Prins |
| 2016-04-20 | external program should fail on return value not zero | pjotrp |
| 2016-04-20 | [PATCH 045/100] Reverted on previous changes. With a corrected••• python2-piddle module the thing works. Turns out that the version we are
using is not the same as the public one. Despite the same version number.
| Pjotr Prins |
| 2016-04-20 | Minor fixes | pjotrp |
| 2016-04-20 | [PATCH 042/100] Sanitizing locations | Pjotr Prins |
| 2016-04-20 | [PATCH 041/100] Fixes for running tools | Pjotr Prins |
| 2016-04-20 | When a sample does not exist we should not set sample_data to None. Better to... | pjotrp |
| 2016-04-20 | -a•••[PATCH 039/100] Removing commented code
| Pjotr Prins |
| 2016-04-20 | -a•••[PATCH 038/100] Fix compile errors
| Pjotr Prins |
| 2016-04-20 | [PATCH 037/100] WebQtlConfig: sanitizing naming and used vars | Pjotr Prins |
| 2016-04-20 | Settled on the _COMMAND syntax over _RUN | pjotrp |
| 2016-04-20 | With missing samples to not add them to the result set | pjotrp |
| 2016-04-20 | This threw an error when sample is missing in the DB.•••Let sample pass without data if the sample/genotype does not exist in
the database.
| pjotrp |
| 2016-04-20 | [PATCH 033/100] Refactored file searching | Pjotr Prins |
