| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2019-06-06 | Replaced ISNULL with IFNULL (which is the correct version for MySQL) | zsloan | |
| Changed the query form for getting a species' groups | |||
| 2019-06-05 | Ensured that a string is returned for SQL fields that can potentially be null | zsloan | |
| 2019-06-05 | Needed to replace single quotes with double quotes for JSON output | zsloan | |
| 2019-06-05 | Additive effects now display for manhattan plots when available | Pjotr Prins | |
| 2019-06-05 | Issue where manhattan plot points went past the edge of the plot should be ↵ | zsloan | |
| fixed now | |||
| 2019-06-05 | Fixed issue that caused interval mapping to not work because the python ↵ | zsloan | |
| implementation of the reaper Dataset object doesn't include the addinterval method (so for those situations I still use reaper) Fixed issue where the last chromosome wasn't displayed for mapping results (though still need to fix issue where points are drawn too far to the right when a specific range is viewed) | |||
| 2019-06-04 | Updated drop-downs (this probably needs to be separated out of the git ↵ | zsloan | |
| repository) | |||
| 2019-06-04 | Changed the logic for deciding y axis digits to deal with situations where ↵ | zsloan | |
| the range is less tan 0.4; not sure if more than this needs to be accounted for | |||
| 2019-06-04 | Fixed issue with probability plot y axis digits | zsloan | |
| 2019-06-04 | Merge branch 'api' of github.com:zsloan/genenetwork2 into testing | zsloan | |
| 2019-06-04 | Added GeneMANIA link | zsloan | |
| Fixed issue that caused error when creating UCSC RefSeq link Fixed issue that sometimes caused an error for phenotype searches Changed some text on collections page | |||
| 2019-05-31 | Added option to get just trait names from traits query, and also fixed ↵ | zsloan | |
| sample_data query to avoid duplicates | |||
| 2019-05-29 | Added option to get traits from dataset to API | zsloan | |
| 2019-05-24 | Fixed issue where change to making sample table unchecked made all figures ↵ | zsloan | |
| not show up | |||
| 2019-05-24 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into api | zsloan | |
| 2019-05-24 | Added status to error messages | zsloan | |
| 2019-05-24 | Return JSON error instead of html now | zsloan | |
| 2019-05-24 | Made a few changes to trait page: | zsloan | |
| - Changed y axis digits for some figures - Changed title for some figures to trait ID - Removed Min Expr filter when correlating with phenotypes - Changed some button colors - Made sample table rows highlightable | |||
| 2019-05-24 | Added currently api progress, which will henceforth be appropriately ↵ | zsloan | |
| committed in this branch | |||
| 2019-05-24 | Replaced qtlreaper Dataset object with python object | zsloan | |
| 2019-05-23 | Fixed issue where some descriptions caused an error | zsloan | |
| 2019-05-17 | Made check for trait IDs a bit more secure to hopefully avoid any errors ↵ | zsloan | |
| similar to the previous one with a missing unigene id | |||
| 2019-05-17 | Fixed issue that caused error for traits with no unigene id | zsloan | |
| 2019-05-14 | Added all of the third party links from GN1 | zsloan | |
| Fixed issue with the script that generates the drop-down menus where phenotype/genotype datasets wouldn't show up for species without any mRNA assay datasets Added icon for smartphones/tablets Made error more informative for main search Added gene symbol column to collections (need to add something that removes the column if it's all empty) | |||
| 2019-05-08 | Fixed issue where descriptions sometimes had unicode characters appear strangely | zsloan | |
| 2019-05-07 | Added link to GeneBridge to trait page | zsloan | |
| 2019-05-07 | Fixed issue where, if the user searched for a location range in the SNP ↵ | zsloan | |
| Browser, it often wouldn't correctly identify when markers were on genes | |||
| 2019-05-06 | Removed horizontal scroll from twitter field on index page | zsloan | |
| 2019-05-06 | Added link to Affiliates section of index page | zsloan | |
| 2019-05-06 | Made some changes Rob asked for to index page; reorganized some items and ↵ | zsloan | |
| made news scrollable | |||
| 2019-05-06 | Removed some unused imports of htmlgen | zsloan | |
| Fixed a bug that sometimes occurred in search results Changed order of items on index page | |||
| 2019-04-26 | Issue where GEMMA LOCO mapping didn't work when samples were edited out ↵ | zsloan | |
| should be fixed now | |||
| 2019-04-26 | Fixed issue where changed smaple values didn't show up in haplotype analyst ↵ | zsloan | |
| results | |||
| 2019-04-18 | Fixed issue that caused removed strains to still appear in the haplotype ↵ | zsloan | |
| analyst track | |||
| 2019-04-12 | Fixed PDF links in reference to point to the PDFs in GN1 | zsloan | |
| 2019-04-12 | - Improved Interval Analyst table appearance in mapping results | zsloan | |
| - Made the text on the "Forgot Password" page more simple and less cluttered - Added line to index page about RANGE search function - Fixed bar chart on trait page so that it sets the bottom margin depending upon the longest sample name length | |||
| 2019-04-10 | Removed option to upload file for submitting traits, since it doesn't ↵ | zsloan | |
| currently work | |||
| 2019-04-10 | Fixed issue that was causing submitted temp traits to not work | zsloan | |
| 2019-04-05 | Fixed issue that caused error for phenotype searches (kind of a quick fix ↵ | zsloan | |
| and I do a try/except for whether it can build the trait object; ideally I should correctly filter out datasets) | |||
| 2019-04-05 | Fixed issue where Max LRS column displayed the mean in global search results | zsloan | |
| 2019-04-04 | Fixed issue where dataset_menu_structure.json included some groups with no ↵ | zsloan | |
| visible datasets | |||
| 2019-04-03 | Fixed an issue that caused global phenotype search to often not work and ↵ | zsloan | |
| certain phenotype datasets to not show up in drop-downs | |||
| 2019-04-03 | Fixed issue where strains could be added twice in the SNP browser, causing ↵ | zsloan | |
| some wonky behavior | |||
| 2019-04-02 | Fixed issue where non-GEMMA mapping would throw an error because it would ↵ | zsloan | |
| still look for the results filename | |||
| 2019-03-29 | Fixed issue that caused PCA results to be different in GN2 than in GN1; one ↵ | zsloan | |
| result needed to be transposed | |||
| 2019-03-29 | Updated UCSC Verify link-out from hg19 to hg38 for humans | zsloan | |
| 2019-03-28 | Added link to GN2 document github wiki to index page | zsloan | |
| 2019-03-28 | Possibly fixed issue where PCA traits didn't calculate for certain sets of ↵ | zsloan | |
| traits | |||
| 2019-03-27 | Changed gen_select_dataset.py to be able to show multiple datasets under the ↵ | zsloan | |
| Phenotype type (for example the GI Tract Metabolome data) Fixed issue where full description was given for some unpublished traits Fixed code related to editing certain pages (like news) with CKEditor, but it still won't work until the CKEditor library is included in GUIX or something | |||
| 2019-03-25 | - Added SVG export to basic stats figures | zsloan | |
| - Fixed issues where some stats figures (mainly box and violin plots) didn't update correctly when sample values were changes - Fixed issue with some temp traits if user wasn't logged in - Fixed issue where traits couldn't be added to a collection from the correlation results page | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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