genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2019-02-13	Removed pylmm references and related functions	Pjotr Prins
2019-02-13	Remove all coffee files	Pjotr Prins
2019-02-12	Added GeneWeaver linkout	zsloan
2019-02-05	Removed redundant header text from search page to save vertical space	zsloan
2019-02-05	Fixed issue with getting marker info that affected heatmap and possibly other...	zsloan
2019-02-04	Changed the way the table is drawn for the search pages so that it can show w...	zsloan
2019-01-22	Fixed issue where Haplotype Analyst in mapping results would always show resu...	zsloan
2019-01-17	Redid gene global search to take JSON data input instead of converting an HTM...	zsloan
2019-01-16	Pushing SNP browser updates	zsloan
2019-01-11	Got InDel working for Variant Browser	zsloan
2018-12-21	Fixed collections so they can be very large (1000+ traits)	zsloan
2018-12-05	Fixed Verify link	zsloan
2018-12-05	Fixed issue where SNP track for mapping did not appear correctly	zsloan
2018-11-20	Added option to select chromosome from trait page when mapping	zsloan
2018-11-13	Changed trait sample table appearance to be more compact	zsloan
2018-11-12	Added change to remove qtlreaper use from correlation and prevent the inconsi...	zsloan
2018-11-05	Fixed quantile normalization issue	zsloan
2018-11-04	Fixed one more thing	zsloan
2018-11-04	Quick fix to issue where GEMMA wouldn't be run simultaneously on traits from ...	zsloan
2018-11-02	Minor fix since sometimes number of samples with values wasn't counted correctly	zsloan
2018-11-02	Committing some changes that get non-LOCO GEMMA mapping working without using...	zsloan
2018-11-01	Updated the way snpbrowser initializes parameters, in preparation for drawing...	zsloan
2018-10-24	- SNP Browser is mostly complete; just need to test more and add SNP density ...	zsloan
2018-10-12	Fixed issue that caused error when mapping single-chromosome, since a second ...	zsloan
2018-10-11	- Added fix for GEMMA LOCO	zsloan
2018-10-01	Missed something when previously resolving the merge conflict	zsloan
2018-10-01	Resolved conflict	zsloan
2018-10-01	- Can now remove cofactors from correlation scatterplot and select them by ju...	zsloan
2018-09-15	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	Pjotr Prins
2018-09-15	Run gemma without debug and checks in production	Pjotr Prins
2018-08-15	The issue with adding anonymous collections should be fixed now	zsloan
2018-08-14	Fixed minor issue in user_manager.py	zsloan
2018-08-14	Added cofactors to correlation scatterplot and changed it to use Plotly	zsloan
2018-07-06	Added square root transform options	zsloan
2018-07-02	Added option to transform/normalize trait sample values (log2 and qnorm) on t...	zsloan
2018-06-08	Added option to add traits to existing collection, which I had forgotten prev...	zsloan
2018-06-08	User collections (now stored in ElasticSearch) are reimplemented now and shou...	zsloan
2018-05-25	Fixed issue causing anonymous collections to not work on my branch and stagin...	zsloan
2018-05-17	Added script to quantile normalize a data set and enter its normalized sample...	zsloan
2018-05-01	Merge /home/lei/gene into testing	zsloan
2018-05-01	Removed all code related to using GEMMA with PLINK input files	zsloan
2018-04-27	Added marker filtering for data set groups with larger genotype files	zsloan
2018-04-23	Changed GEMMA mapping to use -lmm 2 (Likelihood ratio test) as a parameter in...	zsloan
2018-04-19	Changed width of top bar and a couple other html objects to 100% instead of s...	zsloan
2018-04-18	Removed a little more code in webqtlDatabaseFunction.py and do_search	zsloan
2018-04-16	Undoing changes to user_manager.py, because I think they may have caused some...	zsloan
2018-04-16	Resolved conflicts after pulling changes	zsloan
2018-04-16	Removed some unused code from collect.py and user_manager.py	zsloan
2018-04-16	Removed file tracer.py that wasn't being used	zsloan
2018-04-16	Removed a bunch of unused code from the following files:	zsloan