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2020-11-09add test for run_gemma function in marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-09refactor marker_regression/gemma-mapping.py run-gemma function to avoid Index...Alexanderlacuna
2020-11-08add tests for marker_regression/plink_mapping.pyAlexanderlacuna
2020-11-08add tests for marker_regression/gemma_mappingAlexanderlacuna
2020-11-08Change defaultline argument in the build_line_list from None to empty stringAlexanderlacuna
2020-11-06Removed the page selection from the top of the table because it created an aw...zsloan
2020-11-06Changed the show/hide column buttons to use DataTables API + a few other chan......- Fixed a couple column header glossary links to point to GN1 - Added trait_list.css for styling a couple elements common to similar pages (like correlations or view collection) zsloan
2020-11-06Added min-width for the divs containing the analysis tools and table options,......Also made some indentation more consistent zsloan
2020-11-06Added new css file for pages that have trait list tables (not sure what else ...zsloan
2020-11-06Increased the min-width for the show_trait page container div for all the acc...zsloan
2020-11-06After I changed some class names in the trait page to use - instead of _ (to ...zsloan
2020-11-04Changed numeric-html sorting for the Tissue/Lit r columns to natural-minus-na......* wqflask/wqflask/templates/correlation_page.html - Replaced numeric-html sorting with natural-minus-na for the lit/tissue r columns zsloan
2020-11-04Merge pull request #475 from Alexanderlacuna/test-showtrait...Add more tests for show trait moduleBonfaceKilz
2020-11-04correct a typoAlexanderlacuna
2020-11-04remove extra whitespaceAlexanderlacuna
2020-11-04remove whitespace in line 119-120Alexanderlacuna
2020-11-04remove whitespaceAlexanderlacuna
2020-11-04remove whitespace and assertIsAlexanderlacuna
2020-11-03Merge pull request #479 from zsloan/bug/haplotype_analyst_error_fix...Bug/haplotype analyst error fixzsloan
2020-11-03Changed the syntax for the "sort" function in the docstring of GeneralObject ......* wqflask/base/GeneralObject.py - edited docstring to be correct for Python 3 zsloan
2020-11-03Fixed a sort used when doing the haplotype analysis to be compatible with Pyt......* wqflask/wqflask/marker_regression/display_mapping_results.py - The arguments for sort are different in Python 3, so it was changed to be compatible zsloan
2020-11-03Merge pull request #478 from zsloan/loading_page_n_fix...Joined sample names in primary_samples and all_samples with commas be…zsloan
2020-11-03Joined sample names in primary_samples and all_samples with commas because th......* wqflask/wqflask/show_trait/show_trait.py primary_samples and all_samples passed as hidden form inputs now have names split by commas so they can be counted correctly when displaying the N on the mapping loading screen zsloan
2020-11-03Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te...Alexanderlacuna
2020-11-03remove unnecessary commentsAlexanderlacuna
2020-11-03add pep8 formattingAlexanderlacuna
2020-11-03add tests for the get_categorical_variables functionAlexanderlacuna
2020-11-03switch from assertFalse to assertIsAlexanderlacuna
2020-11-03switch from assertTrue/False to assertIs to make the tests tighterAlexanderlacuna
2020-11-03use assertTrue and assertFalse in while testing booleanAlexanderlacuna
2020-11-02Merge pull request #476 from zsloan/correlation_errors_fix...Correlation errors fixzsloan
2020-11-02Created function for encoding the column value as bytes when fetching from th......* wqflask/utility/redis_tools.py - Created function load_json_from_redis that encodes the key (column_value) when fetching a value from the JSON pulled from Redis zsloan
2020-11-02Changed correlation page logic to skip over traits that share fewer than 6 sa......* wqflask/wqflask/correlation/show_corr_results.py - Moved the num_overlap check so that it never attempts to calculate the correlation if it's too low + checked if trait_object is None in the main loop (since it would be returned as None if the user doesn't have permissions zsloan
2020-11-02add better formattingAlexanderlacuna
2020-11-02add function docstringAlexanderlacuna
2020-11-02add tests for show trait moduleAlexanderlacuna
2020-10-31Removed a line adding the ceiling of the Max LRS to the Y axis, since it has ......* wqflask/wqflask/marker_regression/display_mapping_results.py - Removed a line adding the ceiling of the max LRS/LOD value to the Y axis zsloan
2020-10-31remove redundant classesAlexanderlacuna
2020-10-31use descriptive variable namesAlexanderlacuna
2020-10-31Use more descriptive variable and class namesAlexanderlacuna
2020-10-30add test for get_export_metadataAlexanderlacuna
2020-10-30Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te...Alexanderlacuna
2020-10-29Fixed issue with single-chromosome mapping after the bootstrap fix and fixed ......* wqflask/wqflask/marker_regression/display_mapping_results.py - Cast self.qtlresults 'chr' as a string since the comparison between it and the chromosome names was faililng due to numeric chromosomes being int type + used a list comprehension that converts None to an empty string when creating a comma-joined string from the list of mapping output files zsloan
2020-10-29Merge branch 'testing' of github.com:genenetwork/genenetwork2 into reaper_boo...zsloan
2020-10-29add test for show_traitAlexanderlacuna
2020-10-29Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te...Alexanderlacuna
2020-10-29Merge pull request #469 from BonfaceKilz/bug/fix-cookies-verification...Bug/Fix cookie verification bugBonfaceKilz
2020-10-29resolve merge conflictAlexanderlacuna
2020-10-29format fileAlexanderlacuna
2020-10-29remove print statement in for loopAlexanderlacuna
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