genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2020-11-23	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	zsloan
2020-11-23	Changed correlation matrix cells for traits with zero shared samples to inste...	zsloan
2020-11-20	Replace mockobject with dataclasses...* wqflask/tests/unit/wqflask/test_markdown_routes.py (MockRequests404): Use dataclasses. (MockRequests200): Ditto.	BonfaceKilz
2020-11-20	Update tests to use new gn2-docs url	BonfaceKilz
2020-11-20	Replace mistunes with markdown library...* wqflask/wqflask/markdown_routes.py (render_markdown): Use markdown library instead of mistunes.	BonfaceKilz
2020-11-20	Point url for fetching md content to gn-docs repo...* wqflask/wqflask/markdown_routes.py (render_markdown): Use gn-docs URL to fetch markdown content.	BonfaceKilz
2020-11-20	Remove glossary markdown template...* wqflask/wqflask/static/markdown/: Delete folder. Files moved to https://github.com/genenetwork/gn-docs	BonfaceKilz
2020-11-19	Removed lines that check that all traits are part of the same group,...since it might be the case in the future that different groups still share sample names (and it's not really necessary since we check how many samples are shraed between each individual pair of traits)	zsloan
2020-11-18	Fixed issue where the cofactor trait descriptions didn't work correctly...for genotype/snp cofactors (the code previously only accounted for probeset/phenotype cofactors, so it was treating genotypes/snps like phenotype traits)	zsloan
2020-11-18	Changed default Low/High colors for the correlation scatterplot cofactor...coloring to Blue/Red respectively (was originally Light Grey/Black)	zsloan
2020-11-18	Added some jquery closing the "Add To Collection" colorbox window after...its form is submitted	zsloan
2020-11-18	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	zsloan
2020-11-18	Fixed issue that was causing scatterplot cofactors to not work if the...cofactors were genotypes (because it tried to get the "description_display" which doesn't exist for genotype traits)	zsloan
2020-11-18	Removed console.log and commented out statements from...get_traits_from_collection.js	zsloan
2020-11-18	Fixed "back_to_collections" function in get_traits_from_collection.js...(function that lets you return from viewing a collection to viewing the list of collections when selecting cofactors for scatterplot)	zsloan
2020-11-18	Merge pull request #481 from Alexanderlacuna/test-SampleList...Test sample list	BonfaceKilz
2020-11-18	use f strings in marker_regression/qtlreaper_mapping.py	Alexanderlacuna
2020-11-18	use f strings in marker_regression/plink_mapping	Alexanderlacuna
2020-11-17	use better function names	Alexanderlacuna
2020-11-16	update refactored natural_sort function in show_trait/SampleList.py	Alexanderlacuna
2020-11-13	Switched to using f-strings instead of the older method of string...formatting	zsloan
2020-11-13	Switched to using boolean casting to check if various trait attributes...exist	zsloan
2020-11-13	- Added Show/Hide Columns options and included the trait_list.css file...which including styling for said options - Changed some column widths to avoid text wrapping	zsloan
2020-11-13	Added some css to trait_list.css restyling the "show/hide column"...buttons when they're active. Not really pleased with the result, but styling a button to look depressed is a pain	zsloan
2020-11-13	Changed some if/else statements to just initializing the variables + the...if statement and fixed "lrs_location" to "location" for target genotypes	zsloan
2020-11-13	Added cdn imports for fontawesome to correlation page and changed...superscript i's to fontawesome icons for the glossary links in column headers	zsloan
2020-11-13	Replaced superscript i's for glossary links in search result table...headers with fontawesome icons	zsloan
2020-11-12	Import fontawesome css/js and used its info character for glossary links on s...	zsloan
2020-11-12	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into feature/co...	zsloan
2020-11-12	Substituted -log(p) with -logP as mentioned in Rob's e-mail	zsloan
2020-11-12	Show Mb positions to 6 decimal places in mapping results table	zsloan
2020-11-12	refactor code	Alexanderlacuna
2020-11-12	add pep8 fixes in marker_regression/gemma_mapping.py	Alexanderlacuna
2020-11-12	add test for parse gemma output in marker_regression/gemma_mapping.py	Alexanderlacuna
2020-11-12	modify tests for marker regression	Alexanderlacuna
2020-11-11	add tests for marker_regression/rqtl_mapping.py	Alexanderlacuna
2020-11-11	add tests for marker_regression/qtlreaper_mapping.py	Alexanderlacuna
2020-11-11	add tests for marker_regression/run_mapping.py	Alexanderlacuna
2020-11-11	add tests for marker_regression/gemma_mapping.py	Alexanderlacuna
2020-11-11	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	zsloan
2020-11-11	Added Bonface to the footer	zsloan
2020-11-11	Changed some column widths and removed the width for description so it can va...	zsloan
2020-11-11	- Fixed an issue causing the phenotype abbreviation to not be displayed prope......- Set default description to N/A when there's no trait description for phenotype traits	zsloan
2020-11-11	Switched checking if a trait is confidential to checking if it has a pubmed I...	zsloan
2020-11-11	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into feature/ad...	BonfaceKilz
2020-11-11	Update image width	BonfaceKilz
2020-11-11	Add basic markdown styling...* wqflask/wqflask/static/new/css/markdown.css: New file. * wqflask/wqflask/templates/glossary.html: add markdown id to markdown container.	BonfaceKilz
2020-11-10	Changed logic for creating temp trait SampleList to account for both traits e...	zsloan
2020-11-10	* wqflask/wqflask/correlation/show_corr_results.py - Changed some of the para......* wqflask/wqflask/templates_correlation_page.html - Fixed some column defs and removed unused table configuration code	zsloan
2020-11-10	Fixed issue where strain values in bytes needed to be decoded when loading a ...	zsloan