| Age | Commit message (Expand) | Author |
|---|
| 2020-09-10 | Fixed several sorting issues and moved orderDataType definitions into...search_results.js since all the tables that use them import that file
(that file's name needs to be changed, though)
* wqflask/wqflask/static/new/javascript/search_results.js - Added the
dom-checkbox and dom-inner-text order types into this file; they were
previously duplicated across several template files
* wqflask/wqflask/templates/gsearch_gene.html - Added dom-inner-text
order type to relevant columns with hyperlink contents and disabled
deferRender since it conflicted with use of both pagination and
orderDataType for sorting
* wqflask/wqflask/templates/gsearch_pheno.html - Same as above
* wqflask/wqflask/templates/mapping_results.html - Added dom-inner-text
for a few columns that have hyperlink values - still need to modify
natural-minus-na to also include other "N/A"-equivalent values like "--"
* wqflask/wqflask/templates/search_result_page.html Removed the
dom-checkbox and dom-inner-text order types from this file since they
were moved to search_results.js
| zsloan |
| 2020-09-08 | Changed the Add button color for all the different pages that use it...* wqflask/wqflask/templates/collections/view.html - changed Add button
color
* wqflask/wqflask/templates/correlation_matrix.html - changed Add button
color
* wqflask/wqflask/templates/correlation_page.html - changed Add button
color
* wqflask/wqflask/templates/mapping_results.html - changed Add button
color
* wqflask/wqflask/templates/search_result_page.html - changed Add button
color
| zsloan |
| 2020-09-08 | Search code now checks if there are more than 50,000 results before...running the code that queries the DB for max LRS locus information
(which is what takes the most time to run) and sets a variable that
indicates to the template (search_results.html) that it shouldn't show
the results
* wqflask/wqflask/search_results.py - Check number of results from base
query in order to prevent certain searches from running too long
| zsloan |
| 2020-09-08 | Changed regular and global search results table to use the new sort...method that always places NAs at bottom, changed the Add to Collection
button's color, and added something to the regular search page template
to display alternative text if there are more than 50000 results
* wqflask/wqflask/templates/gsearch_gene.html - Added natural-minus-na
sort to certain columns and changed Add button color
* wqflask/wqflask/templates/gsearch_pheno.html - Added natural-minus-na
sort to certain columns and changed Add button color
* wqflask/wqflask/templates/search_result_page.html - Added
natural-minus-na sort to certain columns, changed Add button color, and
added template logic that shows alternative text if there are more than
50,000 results
| zsloan |
| 2020-09-08 | Added a sort function (derived from the natural sort import) that always...places N/As at the bottom regardless of search direction
* wqflask/wqflask/static/new/javascript/search_results.js - created
"natural-minus-na" sort
| zsloan |
| 2020-09-04 | Update how static js/ css files are fetched...* wqflask/wqflask/views.p:(css, js) Add "css" router decorator. Also, if
"js_alt" is in path, fetch the file from "GUIX_PROFILE/share/javascript" instead
of the default directory: "GUIX_PROFILE/share/genenetwork2/javascript"
See: <https://github.com/genenetwork/genenetwork2/issues/436>
| BonfaceKilz |
| 2020-09-01 | There was a missing quote in one of the javascript imports added by the...PR changing them to get fetched from GUIX; I need to check and see if
there are other situations like this
* wqflask/wqflask/templates/mapping_results.html - Added missing quote
| zsloan |
| 2020-09-01 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-09-01 | Fixed indent issue that could cause error when showing the haplotype...analyst in the mapping chromosome view
* wqflask/wqflask/marker_regression/display_mapping_results.py -
Indented a bit of code that was wrongly indented in such a way that the
variable "ind" wasn't set if "plotbxd" is 0
| zsloan |
| 2020-09-01 | Use "md5.min.js" from guix | BonfaceKilz |
| 2020-09-01 | Remove commented out script tags that references CDNs | BonfaceKilz |
| 2020-09-01 | Replace CDNs with packages from guix | BonfaceKilz |
| 2020-09-01 | Add missing apostrophe in url_for args | BonfaceKilz |
| 2020-08-31 | Remove typo at beginning of line...* wqflask/utility/authentication_tools.py: Remove accidental char at beginning
of line.
| BonfaceKilz |
| 2020-08-31 | Merge pull request #431 from BonfaceKilz/Build/add-d3-tip...Use d3-tip from guix | BonfaceKilz |
| 2020-08-31 | Fixed text on not_authenticated to use proper grammar...* wqflask/wqflask/templates/new_security/not_authenticated.html -
Changed "this" to "these" since "data" is plural
| zsloan |
| 2020-08-31 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-31 | Fixed issue that was causing updating resource default privileges to not...work
* wqflask/utility/redis_tools.py - There was an issue where resources
wouldn't be updated if they already existed. This is because the code
didn't yet account for the "update" tag (that is meant to give the
option of preventing updating resources when running the script to enter
all resources into Redis). I changed the logic to add a resource if
"update" is True or the resource doesn't already exist (so it won't if
update is False and the resource exists).
| zsloan |
| 2020-08-31 | Use d3-tip from guix | BonfaceKilz |
| 2020-08-31 | Use chroma from guix...* wqflask/wqflask/templates/correlation_matrix.html: Fetch chroma from guix
profile
| BonfaceKilz |
| 2020-08-31 | Merge pull request #428 from BonfaceKilz/chore/delete-datatables-extensions-f......Delete dataTables and it's extensions from git | BonfaceKilz |
| 2020-08-31 | Merge branch 'testing' into build/python3-migration | BonfaceKilz |
| 2020-08-29 | Fixed issue where exporting traits would throw an error if a dataset's...group didn't have an InbredSetCode set in the DB
* wqflask/utility/authentication_tools.py - Changed get_group_code to
return an empty string instead of None if InbredSetCode doesn't exist
for a dataset group
* wqflask/wqflask/views.py - Changed zipped export filename to
"export_(datetime)" instead of "collection_(datetime)" since this export
can occur from both the collection page and the global search page
| zsloan |
| 2020-08-29 | Fixed issue with exporting traits from multiple different groups from...the collection page (the filename wasn't being set)
* wqflask/wqflask/views.py - Set filename to "collection_(datetime)" in
export_traits_csv because it wasn't being set before
| zsloan |
| 2020-08-28 | Delete dataTables and it's extensions from git...* wqflask/wqflask/static/new/packages/DataTables/: Delete folder.
| BonfaceKilz |
| 2020-08-28 | Merge branch 'testing' into build/python3-migration | BonfaceKilz |
| 2020-08-27 | Added logic that creates a user account if an e-mail is added to a group...that isn't already associated with a GN2 account and sends the user an
e-mail; still need to test
* wqflask/wqflask/group_manager.py - Added logic sending an invitation
e-mail if user_details aren't found for any of the e-mails provided when
adding users to a group
| zsloan |
| 2020-08-27 | Added function for sending an invitation e-mail...* wqflask/wqflask/user_login.py - Added send_invitation_email function,
which does what it says
| zsloan |
| 2020-08-27 | Added manager_user.html because it was missing from git | zsloan |
| 2020-08-27 | Add check for empty group_code when adding a new resource...* wqflask/utility/authentication_tools.py(add_new_resource): If group_code is
"None", an error is thrown when you try to: `group_code + "_" + str(trait_id)`
| BonfaceKilz |
| 2020-08-27 | Add a check for a "uuid" object...* wqflask/wqflask/views.py(json_default_handler): Check for "uuid.UUID" instance
to avoid TypeError.
| BonfaceKilz |
| 2020-08-27 | Update imports...* wqflask/wqflask/api/router.py: Break imports into separate lines and remove
unused ones.
| BonfaceKilz |
| 2020-08-27 | Remove python2 string processing to utf-8...* wqflask/base/trait.py: Remove python2 codecs.BOM_UTF8 methods.
* wqflask/wqflask/search_results.py: Remove utf-8 decode method on string.
| BonfaceKilz |
| 2020-08-27 | Remove relative imports...* wqflask/runserver.py: Relative imports leads to import errors.
| BonfaceKilz |
| 2020-08-27 | Replace dict.iteritems() with dict.items()..."iteritems()" got omitted in python3.X
| BonfaceKilz |
| 2020-08-27 | Convert sibling imports to relative imports...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-import>
| BonfaceKilz |
| 2020-08-27 | Import "reduce" without a try block...* wqflask/wqflask/correlation_matrix/show_corr_matrix.py: Import 'reduce'
| BonfaceKilz |
| 2020-08-27 | Replace string arguments to "hmac.new" with bytearray...See: <https://stackoverflow.com/questions/31848293/python3-and-hmac-how-to-handle-string-not-being-binary>
| BonfaceKilz |
| 2020-08-27 | Fix failing tests | BonfaceKilz |
| 2020-08-27 | Apply pep-8 formatting | BonfaceKilz |
| 2020-08-27 | Remove comment block | BonfaceKilz |
| 2020-08-27 | Replace mysqldb's "escape" with the one from utils.db_tools...Mysqldb's escape returns a binary string. Use utils.db_tools which adds an extra
step of converting the binary string to a string.
| BonfaceKilz |
| 2020-08-27 | Remove redundant methods which are defined elsewhere...* wqflask/base/data_set.py: Delete "create_in_clause", and "mescape" which are
defined in "utility.db_tools"
| BonfaceKilz |
| 2020-08-27 | Add global method to convert binary string to plain string...* wqflask/utility/db_tools.py: escape_string returns a binary string which
introduces a bug when composing sql query string. The escaped strings have to be
converted to plain text.
| BonfaceKilz |
| 2020-08-27 | Remove unused imports | BonfaceKilz |
| 2020-08-27 | Replace "string.split" & "string.join" with python's inbuilt methods | BonfaceKilz |
| 2020-08-26 | Remove debug statement...* wqflask/wqflask/views.py(search_page): "debugf" raises an error since the
first arg is expected to be an int
| BonfaceKilz |
| 2020-08-26 | Remove "from __future__ import new_feature" statements...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-future>
| BonfaceKilz |
| 2020-08-26 | Replace "__cmp__" with "__eq__" magic method...* wqflask/base/GeneralObject.py: "__cmp__" is no longer used in python3. See:
<https://stackoverflow.com/questions/8276983/why-cant-i-use-the-method-cmp-in-python-3-as-for-python-2>
| BonfaceKilz |
| 2020-08-26 | Rename "unicode" to "str"...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-unicode>
| BonfaceKilz |
