| Age | Commit message (Expand) | Author |
|---|---|---|
| 2020-10-29 | Replace map on strip with a list comprehension that calls strip()...* scripts/maintenance/readProbeSetSE_v7.py: In Python3 you can't map string.strip on a list of strings. Instead use a list comprehension and apply strip() on each element of the list. * wqflask/wqflask/marker_regression/plink_mapping.py: Ditto. * wqflask/wqflask/snp_browser/snp_browser.py: Ditto. | BonfaceKilz |
| 2020-10-28 | Use latin-1 encoding when converting hmac secret to bytes...* wqflask/utility/hmac.py (hmac_creation): Use latin-1 when serializing the hmac secret. This ensures that the behaviour of *verify_cookie* remains the same as in the python2 tip. | BonfaceKilz |
| 2020-10-28 | Add new test for hmac_creation with latin-1 secret...* wqflask/tests/utility/test_hmac.py (test_hmac_creation_with_cookie): New test. For this test, use a secret that behaves differently when encoded to either utf-8 or latin-1. | BonfaceKilz |
| 2020-10-28 | Add tests for cookie verification | BonfaceKilz |
| 2020-10-28 | Merge pull request #468 from zsloan/export_fix...Fixed trait page export issue caused by Scroller | zsloan |
| 2020-10-28 | Fixed trait page export to work with Scroller + added metadata for non-Pheno......* wqflask/wqflask/show_trait/export_trait_data.py - Added metadata for non-Phenotype traits and column headers (which didn't previously exist) * wqflask/wqflask/static/new/javascript/show_trait.js - Changed export_sample_table_data to use DataTables API instead of just selecting from the DOM with JQuery | zsloan |
| 2020-10-27 | Cast ProbeSet description as binary to fix encoding issue on global search page...* wqflask/wqflask/gsearch.py - Cast ProbeSet description as binary | zsloan |
| 2020-10-27 | Merge pull request #466 from zsloan/show_trait_attributes_fix...Fix issue where attribute values were displayed in the wrong columns | zsloan |
| 2020-10-27 | Get the "first_attr_start_pos" from a samplelist instead of from each individ......* wqflask/base/webqtlCaseData.py - Removed code getting first_attr_start_pos * wqflask/wqflask/show_trait/SampleList.py - Added code getting first_attr_start_pos and assigning it to all samples + removing one unnecessary sort * wqflask/wqflask/static/new/javascript/initialize_show_trait_tables.js - Fixed issue that was causing the N column to not be displayed | zsloan |
| 2020-10-27 | Cast post and pre-publication descriptions into binary...* wqflask/wqflask/gsearch.py (GSearch): There's an exception thrown when the decode method is called on that description string. If the casting is absent, and the decode statements are removed, the some characters get broken. | BonfaceKilz |
| 2020-10-27 | Merge pull request #465 from Alexanderlacuna/test-branch...add test for trait_data | BonfaceKilz |
| 2020-10-27 | switch from single quote to double quote | Alexanderlacuna |
| 2020-10-27 | address failures | Alexanderlacuna |
| 2020-10-27 | added changes to file | Alexanderlacuna |
| 2020-10-27 | modified to use pep8 standards | Alexanderlacuna |
| 2020-10-27 | Merge pull request #422 from BonfaceKilz/build/python3-migration...Build/python3 migration | BonfaceKilz |
| 2020-10-26 | modified test file | Alexanderlacuna |
| 2020-10-26 | Add page load metrics to footer...* wqflask/wqflask/__init__.py (before_request): New function. Add method for calculating total request_time to global context. * wqflask/wqflask/templates/base.html: - Display total server load time. - Display total page rendering time, and add js functionality to calculate it. | BonfaceKilz |
| 2020-10-23 | Fixed bootstrap results when using interval mapping for the full genome view;......* wqflask/wqflask/marker_regression/display_mapping_results.py - Fixed bootstrap results by iterating through qtlresults instead of self.genotype (the latter didn't have intervals added, resulting in the bootstrap result positions being wrong) | zsloan |
| 2020-10-23 | Merge pull request #462 from zsloan/fix_export_error...Fixed trait export for situations where there's no authors/title/journal | zsloan |
| 2020-10-23 | Fixed trait export for situations where there's no authors/title/journal | zsloan |
| 2020-10-22 | Merge pull request #460 from zsloan/move_styling_to_css...Move styling to css | zsloan |
| 2020-10-21 | Removed code setting the maximum tick value to 1.15* the max LRS/LOD if permu... | zsloan |
| 2020-10-21 | Ensured all Y axis ticks in the mapping figure are below the top of the figur......* wqflask/wqflask/marker_regression/display_mapping_results.py - Set LRS_LOD_Max (the top tick value) as the maximum value between the significant value (if permutations are used) and the max LRS/LOD value; previously it would set it as the significant value * 1.1 if the significant value exists and is higher than the max LRS/LOD value. | zsloan |
| 2020-10-20 | Fixing typo in JS code where "attribute_start_pos" said "attribute_start_post" | zsloan |
| 2020-10-20 | Fixed some problems with the previous attempt at resolving conflicts before m... | zsloan |
| 2020-10-20 | Merge branch 'testing' into move_styling_to_css | zsloan |
| 2020-10-20 | Added classes to replace styling in show_trait_edit_data.html to show_trait.c......* wqflask/wqflask/static/new/css/show_trait.css - Moved show_trait_edit_data.html styling to this file and changes padding for the checkbox table cell to better center it; for some reason text-align: center wasn't working and it specifically needed left-padding * wqflask/wqflask/static/new/javascript/show_trait.js - Replaced underscores with - in class names * wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js - Replaced underscores with - in class names | zsloan |
| 2020-10-20 | Replaced _ with - in class names (though this change will end up being unnece......* wqflask/wqflask/templates/show_trait.html - Replaced underscores with - in class names | zsloan |
| 2020-10-20 | Replaced one class name with a more generic "inline-div" since there are othe... | zsloan |
| 2020-10-20 | Made class names consistently use - instead of _ in show_trait_edit_data.html...* wqflask/wqflask/templates/show_trait_edit_data.html - replaced underscores with - | zsloan |
| 2020-10-20 | Merge branch 'testing' into build/python3-migration | BonfaceKilz |
| 2020-10-20 | Update how pbkdf2.pbkdf2_hex is used when encrypting pass...* wqflask/wqflask/user_login.py (encode_password): - Remove unused local variable "salt". - Pass "hashfunc" as a string. - Apply Pep-8. | BonfaceKilz |
| 2020-10-20 | Add tests for encoding password...* wqflask/tests/wqflask/test_user_login.py: New tests. | BonfaceKilz |
| 2020-10-20 | Update pbkdf2...* wqflask/wqflask/pbkdf2.py: Remove unnecessary pbkdf2 usage docs--- it already exists in python3 stdlib--- and "__main__" section which runs the test. (imports): Delete unused imports. Add safe_str_cmp. (pbkdf2_hex): Use hashlib.pbkdf2_hmac. (safe_str_cmp): Replace with werkzeug.security.safe_str_cmp (test): Delete it. Tests moved to test_pbkdf2.py. | BonfaceKilz |
| 2020-10-20 | Add pbkdf2 tests...* wqflask/tests/wqflask/test_pbkdf2.py: New tests. | BonfaceKilz |
| 2020-10-20 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-10-19 | Merge branch 'testing' into scroller_testing | zsloan |
| 2020-10-19 | Update snpString link...* wqflask/wqflask/marker_regression/display_mapping_results.py: Replace "%" strings with f-strings. Also, replace old "Href" with new htmlgen "Link" method. | BonfaceKilz |
| 2020-10-19 | Delete stale comment | BonfaceKilz |
| 2020-10-15 | Fixed issue that caused interval map setting to not work correctly for reaper......* wqflask/wqflask/templates/show_trait_mapping_tools.html - Mistakenly reversed true/false in the reaper Interval Map option | zsloan |
| 2020-10-15 | Replaced the styling in show_trait_mapping_tools.html with CSS and changed so......* wqflask/wqflask/marker_regression/run_mapping.py - "manhattan_plot" is now passed as lower-case "true"/"false" to match the case of other boolean options * wqflask/wqflask/static/new/css/show_trait.css - Added classes for the styling in show_trait_mapping_tools.html * wqflask/wqflask/static/new/javascript/get_covariates_from_collection.js - Changed class name "selected_covariates" to "selected-covariates" to match class naming scheme * wqflask/wqflask/static/new/javascript/show_trait.js - Changed class name "selected_covariates" to "selected-covariates" to match class naming scheme * wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js - Changed class names from using underscore to useing "-" to match class naming scheme * wqflask/wqflask/templates/show_trait_mapping_tools.html - Replaced styling with class names and changed some styling to be more simple/consistent | zsloan |
| 2020-10-15 | Put the correlation descriptions inside of a div so that they could have thei... | zsloan |
| 2020-10-15 | Replaced styling from show_trait_transform_and_filter.html with CSS...* wqflask/wqflask/static/new/css/show_trait.css - Added styles for elements in show_trait_transform_and_filter.html * wqflask/wqflask/templates/show_trait_transform_and_filter.html - Replaced styling in template with classes | zsloan |
| 2020-10-14 | Removed some commented out HTML | zsloan |
| 2020-10-14 | Converted show_trait_calculate_correlations.html to use CSS instead of stylin......* wqflask/wqflask/static/new/css/show_trait.css - Added styling for elements in show_trait_calculate_correlations.html and changed a few existing class names to be more reasonable * wqflask/wqflask/templates/show_trait.html - Changed the class name for the main div * wqflask/wqflask/templates/show_trait_calculate_correlations.html - Substituted direct styling with CSS and changing some styling to make the correlation method descriptions keep a reasonable width and position * wqflask/wqflask/templates/show_trait_statistics.html - Changed some class names to be better | zsloan |
| 2020-10-14 | Changed a couple class names because it's probably dumb to include the pixels......* wqflask/wqflask/static/new/css/show_trait.css - Changed a couple class names * wqflask/wqflask/templates/show_trait_statistics.html - Changed a couple class names | zsloan |
| 2020-10-14 | Moved show_trait_statistics.html styling to show_trait.css and fixed a minor ......* wqflask/wqflask/static/new/css/show_trait.css - Moved styling from show_trait_statistic.html here * wqflask/wqflask/templates/show_trait_statistics.html - Replaced styling with classes, removed some unnecessary/unused styling, and added some missing label text | zsloan |
| 2020-10-13 | Added styling from show_trait_details.html to show_trait.css...* wqflask/wqflask/static/new/css/show_trait.css - Added the bottom margin styling for the div containing the buttons * wqflask/wqflask/templates/show_trait_details.html - Removed some unnecessary styling and moved the styling for .btn_toolbar to show_trait.css | zsloan |
| 2020-10-13 | Changed styling in show_trait.html to use CSS instead...* wqflask/wqflask/static/new/css/main.css - Added CSS for min-height in table cells with checkboxes, since this would apply to all tables throughout the site * wqflask/wqflask/static/new/css/show_trait.css - Added CSS for styling that was previous in show_trait.html * wqflask/wqflask/templates/show_trait.html - Replaced directly styling with classes | zsloan |
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