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2018-04-06See #308....Cytoscape and related is now loaded from Guix. Use the latest GN2_PROFILE. Pjotr Prins
2018-04-05Removed cytoscape - it is in GuixPjotr Prins
2018-04-05Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te...Muriithi Frederick Muriuki
2018-04-04Changed bar chart y axis range to avoid situation where all variation is clus...zsloan
2018-04-04Merge pull request #303 from pjotrp/testing...Minor edits and document on ESzsloan
2018-04-04Authentication: comments addedPjotr Prins
2018-04-04ES: docPjotr Prins
2018-04-04Switched to plotly probability plot...Removed a variety of scripts that weren't being used on the trait page zsloan
2018-04-02Fixed link for staging serverzsloan
2018-04-02Fixed error that caused server to not start with new user codezsloan
2018-04-02Merge pull request #301 from pjotrp/testing-rm-bloat...Testing rm bloat (jqplot and ckeditor)zsloan
2018-04-02Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2018-04-02Just added link to staging branch to header barzsloan
2018-04-02Config files are store in https://github.com/genenetwork/gn-deploy-servers repoPjotr Prins
2018-04-02Remove filePjotr Prins
2018-04-02User manager no longer uses SQLPjotr Prins
2018-04-02js: rm ckeditor - need to replacePjotr Prins
2018-04-02js: removed jqplotPjotr Prins
2018-04-02user_session add outputPjotr Prins
2018-03-31Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te......* Fix conflicts Muriithi Frederick Muriuki
2018-03-30Collections: use logging instead of print (@zsloan)Pjotr Prins
2018-03-30Fixes related to E-mail forgotten passwordPjotr Prins
2018-03-30Fixes related to E-mail forgotten passwordPjotr Prins
2018-03-30Fixes forgotten password error, see #257Pjotr Prins
2018-03-29Can now add markers to collection from mapping results pagezsloan
2018-03-29Resolved conflict in views.pyzsloan
2018-03-29Fixed box plots and got them to update with changed sample data...Removed fast correlation option because it doesn't work well with gunicorn Changed the type of logger from error to debug when logging which page is being visited in views.py zsloan
2018-03-29Fixed gsearch blowout https://github.com/genenetwork/genenetwork2/issues/295Pjotr Prins
2018-03-29Type checking in its own filePjotr Prins
2018-03-29Search: improved regex and some debug infoPjotr Prins
2018-03-29Disable caching of search errorsPjotr Prins
2018-03-29Checking search error terms with regexPjotr Prins
2018-03-29Illegal search term corrected treatment and no longer shows as error in logsPjotr Prins
2018-03-26Remove flask_security module - not usedPjotr Prins
2018-03-26Use logger.info instead of logger.debug, fixes https://github.com/genenetwork...Pjotr Prins
2018-03-26Skip automatic use of EXPLAIN_TEMPLATE_LOADING.Pjotr Prins
2018-03-26Refactor startup config for gunicorn and werkzeugPjotr Prins
2018-03-26FixPjotr Prins
2018-03-26Authentication: some mods around defaultsPjotr Prins
2018-03-26- Disabled PYTHONPATH injection - fix Guix instead, see https://github.com/pj......- Renamed WQFLASK_SETTINGS to GN2_SETTINGS Pjotr Prins
2018-03-26Check that key exists before using it...* Ensure the key exists in the json object/dictionary, before trying to use it to retrieve a value. Muriithi Frederick Muriuki
2018-03-26Provide connections to elasticsearch...* Provide connections to elasticsearch at various points in the code. These oversight was caught while running tests. Muriithi Frederick Muriuki
2018-03-26Fix assumption of existing collection...* When logging in, if a user selects "Import existing collections", the system would throw an exception, since Redis would return a NoneType, which would then be accessed by json.loads(), which doesn't seem to know how to process that. This fixes that, by providing a string representing an empty json array ("[]"), in place of the NoneType. Muriithi Frederick Muriuki
2018-03-26Add more login tests.Muriithi Frederick Muriuki
2018-03-26Added unittest examplePjotr Prins
2018-03-26Fixing authentication stuff so it uses parameters properly. Also no PYTHONPAT......it is now in the Guix build. Pjotr Prins
2018-03-26Add tests for Registration process.Muriithi Frederick Muriuki
2018-03-26Update module to make it more testable...* Update functions to make them more testable. * Update code using updated functions. Muriithi Frederick Muriuki
2018-03-26Check elasticsearch at point of use...* Instead of checking for the state of elasticsearch at startup, check the state at the moment the user requests a feature that depends on elasticsearch. This reduces the chances that the user is dropped onto an exception page when elasticsearch server goes down. Muriithi Frederick Muriuki
2018-03-26Add check for elasticsearch...* Add some extra checks to ensure that elasticsearch is running before presenting the UI to the user. Muriithi Frederick Muriuki