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genenetwork2
acenteno
authentication_test
blatseq_fix
chores/code-refactoring
chores/lmdb-integration
chores/replace-cdns
chores/script-textfile-generator
correlations-return-fewer-results
debug-too-many-connections-error
decouple_tools_and_wqflask_app
development
epysode
feature/search-history
feature/textfile-generator
gn-master
guix-shell
hook-up-auth-to-traits-page
itp_covariate_testing
jupyter_notebooks_ui
lmdb-code/refactoring
master
notebooks_api
oauth2-migrate-user-details-and-data
partial-correlations
partial_corr_ui_rework
pcorrs_targets
penguin2
phewas
production
proxy-integration
refactor-configurations
refactor-data_set_py-20220920
revert-366-360_update_htmlgen
rework-genotype-linking
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GeneNetwork (2nd generation)
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Author
2019-03-18
- Added PCA traits to correlation matrix. You can't change their names yet or...
zsloan
2019-03-13
Zooming into chromosome or remapping with GEMMA is now very fast, since it st...
zsloan
2019-03-11
Changed header style, because the jumbotrons previously used didn't look that...
zsloan
2019-03-11
Added default empty collection when user is logged in and attempts to add tra...
zsloan
2019-03-07
Changed the way covariates are displayed when selected for mapping
zsloan
2019-03-07
Made violin plots for different groups/sample-sets different colors and match...
zsloan
2019-03-07
Fixed issue where pressing enter in the search page text area would go to a n...
zsloan
2019-03-07
Fixed issue where correlation results containing NaN results sorted incorrectly
zsloan
2019-03-06
Cofactor option for correlation scatterplot was broken; it should be fixed now
zsloan
2019-03-05
Made R/qtl metho/model names better and added some javascript to disable wron...
zsloan
2019-03-04
Fixed excel export to show all columns
zsloan
2019-03-04
- Added z-score transformation
zsloan
2019-03-01
Added alternating point colors for manhattan plots
zsloan
2019-03-01
Changed loading page to work for any feature, instead of having to make a sep...
zsloan
2019-03-01
Added more information to the top-right corner of the mapping results
zsloan
2019-02-27
Added loading page for correlation
zsloan
2019-02-22
Fixed some appearance issues with several tables
zsloan
2019-02-18
Updated installation instructions and SERVER_PORT for single flask server
Pjotr Prins
2019-02-15
Fixed error caused by change to N values in database (now takes strings inste...
zsloan
2019-02-14
Fixed minor bug with updating stats figures when sample values changed
zsloan
2019-02-14
Changed trait page tables to load JSON
zsloan
2019-02-13
Removed pylmm references and related functions
Pjotr Prins
2019-02-13
Remove all coffee files
Pjotr Prins
2019-02-12
Added GeneWeaver linkout
zsloan
2019-02-05
Removed redundant header text from search page to save vertical space
zsloan
2019-02-05
Fixed issue with getting marker info that affected heatmap and possibly other...
zsloan
2019-02-04
Changed the way the table is drawn for the search pages so that it can show w...
zsloan
2019-01-22
Fixed issue where Haplotype Analyst in mapping results would always show resu...
zsloan
2019-01-17
Redid gene global search to take JSON data input instead of converting an HTM...
zsloan
2019-01-16
Pushing SNP browser updates
zsloan
2019-01-11
Got InDel working for Variant Browser
zsloan
2018-12-21
Fixed collections so they can be very large (1000+ traits)
zsloan
2018-12-05
Fixed Verify link
zsloan
2018-12-05
Fixed issue where SNP track for mapping did not appear correctly
zsloan
2018-11-20
Added option to select chromosome from trait page when mapping
zsloan
2018-11-13
Changed trait sample table appearance to be more compact
zsloan
2018-11-12
Added change to remove qtlreaper use from correlation and prevent the inconsi...
zsloan
2018-11-05
Fixed quantile normalization issue
zsloan
2018-11-04
Fixed one more thing
zsloan
2018-11-04
Quick fix to issue where GEMMA wouldn't be run simultaneously on traits from ...
zsloan
2018-11-02
Minor fix since sometimes number of samples with values wasn't counted correctly
zsloan
2018-11-02
Committing some changes that get non-LOCO GEMMA mapping working without using...
zsloan
2018-11-01
Updated the way snpbrowser initializes parameters, in preparation for drawing...
zsloan
2018-10-24
- SNP Browser is mostly complete; just need to test more and add SNP density ...
zsloan
2018-10-12
Fixed issue that caused error when mapping single-chromosome, since a second ...
zsloan
2018-10-11
- Added fix for GEMMA LOCO
zsloan
2018-10-01
Missed something when previously resolving the merge conflict
zsloan
2018-10-01
Resolved conflict
zsloan
2018-10-01
- Can now remove cofactors from correlation scatterplot and select them by ju...
zsloan
2018-09-15
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing
Pjotr Prins
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