genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2016-09-09	Merge branch 'master' of github.com:genenetwork/genenetwork2	Pjotr Prins

2016-09-02	Added Network Graph feature that uses cytoscape.js. Currently you can view ↵	zsloan
	GN2 and third party links when clicking a node, view scatterplot when clicking an edge, and edges appearance varies based upon correlation Fixed issue that caused error with correlation page
2016-08-26	Fixed appearance (border width mostly) of basic stats table on trait page	zsloan
	Removed unnecessary datatables javascript code that referred to basic stats table
2016-08-24	Fixed issue causing bootstrap results to not plot correctly.	zsloan

2016-08-24	Replaced post-publication description with pre-publication description for ↵	zsloan
	confidential phenotype traits in search results and trait pages Fixed table style for mapping results and interval analyst tables and added additive/dominance effect columns to the former Fixed mapping figure X-axis to accurately label Centimorgans vs Megabases (previously it would always say Megabases) Removed the "Sequence Site" marker from mapping result figure when mapping with genetics (centimorgans) scale Removed some unused javascript libary imports from search/global search pages
2016-08-17	Updated dataTables from 1.10.8 to 1.10.12 on search result page	zsloan

2016-08-17	Fixed problem where Year column didn't sort properly in phenotype search and ↵	zsloan
	global search results
2016-08-16	Users can now select specific traits from collection when using collection ↵	zsloan
	tools (correlation matrix, wgcna, etc) To do the above, changed the way form submission worked for those features; previously each feature had its own form, but that was dumb so instead I wrote a javascript function that just changed a single form's target url Duplicate traits can no longer by added to collections Fixed the digits for a few table columns in collection (additive effect, etc).
2016-08-15	Removed text recommending winsoring when mapping since that feature isn't ↵	zsloan
	implemented yet Added padding to header text of Basic Statistics table
2016-08-12	Changed pop-up asking to import collections to less obtrusive checkbox	zsloan
	Decreased collections/list table width
2016-08-11	Added prompt when user logs in that lets them choose to import existing ↵	zsloan
	anonymous collections as user collections
2016-08-08	Fixed bug where Interval Analyst result wouldn't appear for chromosome X in ↵	zsloan
	mice/rats Fixed broken image link in Interval Analyst table for rats Small change to column width of gene global search
2016-08-05	Fixed issue that caused some interval mapping results to be wrong; the cause ↵	zsloan
	seems to be related to some strains being renamed in the genofiles Added a message to the Add to Collection page warning users that anonymous collections will only be stored for 5 days Updated genofiles
2016-08-03	Fixed issue with certain sample names (for example BXD48a, BXD72a, etc) that ↵	zsloan
	caused single chromosome mapping to not work Disabled bootstrap for mapping unil issue causing wrong results is fixed Added header to first column of basic statistics table and increased width to avoid rows spilling over to second line
2016-07-29	Fixed issue where you couldn't delete collections when logged in	zsloan

2016-07-29	Merge branch 'cookie_sessions' of github.com:zsloan/genenetwork2 into ↵	zsloan
	development Conflicts: wqflask/base/data_set.py
2016-07-29	Fixed a couple issues where you couldn't remove or add traits to user ↵	zsloan
	collections
2016-07-27	Problem with phenotype traits should be fixed now	zsloan

2016-07-27	Fixed problem with phenotype traits causing error	zsloan
	Can now remove traits from collections and add to existing collections Fixed a few other minor collection bugs
2016-07-26	Docs: genotype	Pjotr Prins

2016-07-20	Changed anonymous collections to list of dictionaries instead of a ↵	zsloan
	dictionary of dictionaries Can now add collections, view list of collections, and view collections from the collection list with anonymous collections
2016-07-19	Now correctly displays number of collections in top menu bar for non-logged ↵	zsloan
	in users
2016-07-18	Now correctly displays existing collections in 'add to collection' dropdown menu	zsloan

2016-07-18	Committing latest changes to anon collection stuff, but still need to fix ↵	zsloan
	some issues
2016-07-16	README: added info	Pjotr Prins

2016-07-11	Can now create a collection when not logged in (get to the view_collection ↵	zsloan
	page), though still need to fix the code that lets you change a collection or list collections
2016-07-06	Committing current process on enabling multiple collections for users who ↵	zsloan
	aren't logged in, but doesn't work yet
2016-06-28	Logger: disabled some noisy loggers	Pjotr Prins

2016-06-26	gn_server: simplify	Pjotr Prins

2016-06-26	gn_server: simplify	Pjotr Prins

2016-06-26	gn_server: introduced one new query to fetch a dataset record and force ↵	Pjotr Prins
	fetch1 to return a tuple
2016-06-26	views: Reintroduce missing headers	Pjotr Prins

2016-06-26	Resolve conflicts	Pjotr Prins

2016-06-24	Removed function 'get_info' in trait.py that was never used and reomved ↵	zsloan
	'get_trait_info' call from search_result_page.py because its query was already being run
2016-06-24	Fix redis	Pjotr Prins

2016-06-24	Log: and document SQL calls	Pjotr Prins

2016-06-23	Logger: SQL	Pjotr Prins

2016-06-23	Logger: SQL	Pjotr Prins

2016-06-23	Logger: SQL	Pjotr Prins

2016-06-23	Log: SQL queries	Pjotr Prins

2016-06-23	Add fetchall iterator	Pjotr Prins

2016-06-23	views: close db handling	Pjotr Prins

2016-06-23	Added fetching menu info	Pjotr Prins

2016-06-23	Removed dependency on dataset_menu_structure.json	Pjotr Prins

2016-06-23	Logger: improved logging	Pjotr Prins

2016-06-23	Clean up database connector after session	Pjotr Prins

2016-06-23	Logger: prettify	Pjotr Prins

2016-06-23	Fixed missing GN_SERVER_URL	Pjotr Prins

2016-06-23	Fixed missing GN_SERVER_URL	Pjotr Prins

2016-06-23	Pass GN_SERVER_URL into Javascript renderer of menu	Pjotr Prins