| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2015-06-26 | Fixed bug where mapping results sometimes wouldn't display. This would occur | zsloan | |
| due to a chromosome (in this case the last) not having any markers. Improved the way plink gets its path/command to use a method similar to the one Pjotr used with pylmm. I'll also do this for the other mapping methods. Fixed issue where the Y axis would always say LOD score. It now says LRS for mapping methods that return LRS Switched interval mapping (qtl reaper) to use the marker_regression template and removed the interval_mapping template (since it's unnecessary) Some commented out changes remain (in show_trait_mapping_tools and create_lodchart) from when I was attempting to open the mapping results in a new page. I had resolved every issue but the mapping javascript (lod_chart) not being able to access js_data (which has all the result data; markers, p-values, etc). I'm pretty sure that this is because js_data was inserted into the html after the page was loaded while the chart code ran immediately. I experimented with adding a short timeout to the mapping javascript and data table javascript, but while it worked for the table it did not work for the mapping figure. I don't know why this is. | |||
| 2015-06-22 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan | |
| Conflicts: wqflask/wqflask/templates/marker_regression.html | |||
| 2015-06-22 | Just a few minor changes before pulling Artem's fix to the mapping issue. | zsloan | |
| 2015-06-22 | Merge pull request #75 from lomereiter/fix_search | zsloan | |
| fix genotype search | |||
| 2015-06-21 | fix mapping results loading | Artem Tarasov | |
| 2015-06-20 | fix genotype search | Artem Tarasov | |
| 2015-06-18 | Fixed issue that prevented multiple mapping submissions without refreshing. ↵ | zsloan | |
| Also changed to where results open in new window instead of colorbox, though an issue remains where the css doesn't seem to be getting imported properly. | |||
| 2015-06-17 | Now you can expand/contract tabs on the trait page by click anywhere on the bar | zsloan | |
| 2015-06-16 | Finished adding all the extra tools/links below the trait details | zsloan | |
| 2015-06-05 | Added back in some of the options on the trait page; Add, Find, and Verify ↵ | zsloan | |
| now work. I'll get the other 4 working next. | |||
| 2015-06-04 | Fixed a minor issue that was causing position search to not work. | zsloan | |
| 2015-06-02 | Wildcards can now be appended to mRNA assay searches, but isn't working ↵ | zsloan | |
| correctly yet with phenotypes | |||
| 2015-06-02 | Added Panduka's Genotation tool link to the trait page, along with the Gene, ↵ | zsloan | |
| OMIM, and GenBank links | |||
| 2015-06-02 | Wildcard search should now work for Genotype searches | zsloan | |
| 2015-06-02 | Wildcard search (*) works for regular mRNA assay and phenotype searches and ↵ | zsloan | |
| fixed issue with black columns in correlation page | |||
| 2015-05-26 | Merge pull request #60 from lomereiter/pp | zsloan | |
| add missing file | |||
| 2015-05-26 | add missing file | Artem Tarasov | |
| 2015-05-26 | Merge pull request #58 from lomereiter/pp | zsloan | |
| Use NVD3 for bar chart and probability plot | |||
| 2015-05-26 | fix terminology | Artem Tarasov | |
| 2015-05-26 | use NVD3 for bar charts | Artem Tarasov | |
| added informative tooltips and error bars | |||
| 2015-05-23 | pp group selection | Artem Tarasov | |
| 2015-05-23 | fix group selection in blocking by index | Artem Tarasov | |
| 2015-05-23 | Fix trait grouping | Artem Tarasov | |
| 2015-05-23 | new probability plot (using NVD3 library) | Artem Tarasov | |
| * z scores are computed on the client side (using jStat library) * added Shapiro-Wilk test results | |||
| 2015-05-22 | Fixed issue where correlation didn't work for human traits (and probably ↵ | zsloan | |
| some others) | |||
| 2015-05-21 | Changed the digits for additive effect and megabases in the search results table | zsloan | |
| 2015-05-20 | Merge pull request #53 from lomereiter/bar_chart_improvements | zsloan | |
| Bar chart improvements | |||
| 2015-05-20 | revert database.py setup | Artem Tarasov | |
| 2015-05-20 | bar charts polished | Artem Tarasov | |
| * fixed bar chart width (two bars were invisible) * disabled basic stats update effects, if they are not visible * fix: unchecked samples were shown in charts (because attr('checked') was used instead of prop('checked')) * bar chart gets redrawn after checkbox changes * edit_data_change is also called when clicking buttons from the 'Block samples' panel * better bar chart transitions (use sample name as d3 key function) | |||
| 2015-05-19 | Fixed an issue causing position search to not work in a combined search. | zsloan | |
| 2015-05-19 | Fixed an issue that caused combined search to not work | zsloan | |
| 2015-05-20 | improved legend | Artem Tarasov | |
| Now the legend is always positioned on top, so that no overlapping with the plot occurs and it's always visible. The legend is now composed of spans, not an SVG anymore. Also increased the legend font size to 20px. | |||
| 2015-05-19 | Regular LRS searches and p-value searches now work. | zsloan | |
| 2015-05-18 | fix attribute coloring | Artem Tarasov | |
| also I found out that there are two legends shown simultaneously, but one is suitable only for discrete values, and the other for continuous; now only the suitable one is shown | |||
| 2015-05-18 | Merge branch 'upstream' of github.com:lomereiter/genenetwork2 into issue28 | Artem Tarasov | |
| 2015-05-18 | fix broken trait page | Artem Tarasov | |
| 2015-05-15 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan | |
| 2015-05-15 | Position search now works for mRNA assay and genotype data sets | zsloan | |
| 2015-05-15 | reduce number of queries | Artem Tarasov | |
| 2015-05-15 | wip | Artem Tarasov | |
| 2015-05-13 | Fixed issue where you could change the Make Default button's text | zsloan | |
| 2015-05-13 | Fixed sorting on the trait page so that x values always appear at the bottom | zsloan | |
| 2015-05-13 | Improved sorting for columns with N/A or missing values | zsloan | |
| 2015-05-13 | Merge pull request #39 from pjotrp/master | zsloan | |
| Refactoring finding tools such as pylmm | |||
| 2015-05-13 | comment out sql query logging | Artem Tarasov | |
| 2015-05-13 | combine three similar queries into one | Artem Tarasov | |
| 2015-05-13 | replace multiple tissue queries with a single one | Artem Tarasov | |
| 2015-05-13 | cache datasets for each group | Artem Tarasov | |
| 2015-05-12 | Add info to warning | pjotrp | |
| 2015-05-12 | Remove app line | pjotrp | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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