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2021-03-25add code for calling gn3 correlation endpointAlexander Kabui
2021-03-24initial commit for integrating to gn3 apiAlexander Kabui
2021-03-24initial commit for gn3-correlation api integrationAlexander Kabui
2021-03-16Fixed test_check_resource_availability_of_super_user to account for user_id ↵zsloan
being returned as bytes instead of a str
2021-03-16Added try/except to convert owner_id to bytes if necessaryzsloan
2021-03-16Fixed encoding in load_json_from_redis to account for the first that column ↵zsloan
values are sometimes stored as bytes and sometimes as strings
2021-03-16Fixed encoding to make get_user_groups work properly, since the user IDs for ↵zsloan
groups in Redis are stored as strings
2021-03-16Removed unnecessary encoding of user_id from authentication_tools.pyzsloan
2021-03-16Removed unnecessary decoding when getting user_id from UserSessionzsloan
2021-03-12Fixed imports in send_forgot_password_email since they apparently needed to ↵zsloan
be changed for Python 3.8
2021-03-07Right-aligned the Mean column for phenotype global searchzsloan
2021-03-07Limited Mean for phenotype global search to 3 decimal placeszsloan
2021-03-04Fixed issue that caused JS to break when trait description contains a ↵zsloan
newline character
2021-03-03Checked if pre_publication_description is NULL, because there was an error ↵zsloan
resulting from a trait missing both pre_publication_description and pubmed ID
2021-02-23Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-02-23This should fix the issue with Haplotype Analyst sample names/values not ↵zsloan
being displayed correctly
2021-02-19Fixed test_gen_menu to reflect updated queryzsloan
2021-02-19Fixed TestCheckResourceAvailability to make it work after realizing that ↵zsloan
Redis.smembers apparently returns values as bytes
2021-02-19Fixed test_run_mapping.py to make export_mapping_results test work correctlyzsloan
2021-02-19Patched utility.authentication_tools.g as TestUserSession because otherwise ↵zsloan
the str.encode failed on the mock.Mock() object, and this also seems consistent with the way it's done in a later method
2021-02-18Increased sample table width added for each case attribute. At some point ↵zsloan
this needs to be made 'smarter,' since this might look funny if all case attribute column are narrow
2021-02-18Committing changes that added some fields to mapping export - one of the ↵zsloan
tests I changed assumed these changes were already made, so including them should fix that
2021-02-18Convert user ID to stringzsloan
2021-02-18Remove the deocde since it was throwing an errorzsloan
2021-02-18Changed gsearch to be able to account for permissions either being a list or ↵zsloan
a string
2021-02-18Changed DEFAULT_PERMISSIONS AND SUPER_PERMISSIONS to not have permissions be ↵zsloan
lists (I think the proxy expects them to not be lists, but then returns them as lists; need to check about this)
2021-02-18Changed authentication_tools.py to account for encoding str as bytes and ↵zsloan
dealing with the permissions response either being a list or not a list (this should be temporary until I figure out what is going on here)
2021-02-18Need to account for permissions having either a list or string until I ↵zsloan
figure out what's going on with the proxy
2021-02-18Fixed missing colonzsloan
2021-02-18Fixed checking permissions in trait.pyzsloan
2021-02-18Fixed views.py to read properly formatted access masks correctlyzsloan
2021-02-18Fixed SUPER_PRIVILEGES and DEFAULT_PRIVILEGESzsloan
2021-02-18Fixed remaining issue with gen_menu query to also sort by CreateTime, change ↵zsloan
OrderList sort to put NULLs at bottom, and exclude datasets with public = 0
2021-02-18Fixed gen_menu to order ProbeSet datasets correctly - needed to remove DESCzsloan
2021-02-17Fixed error caused by user IDs being encoded as byteszsloan
2021-02-16Changed a couple loops to checking if value is in a list comprehensionzsloan
2021-02-16Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-02-16Added iDisplayLength to search result table that should fix the issue where ↵zsloan
it was only showing 10 results when there are between 10 and 20 results
2021-02-13fix:broken-linksAlexander Kabui
2021-02-13replace broken links with textAlexander Kabui
2021-02-13add styles for broken linksAlexander Kabui
2021-02-12Fixed row highlighting for Interval Analyst tablezsloan
2021-02-12Changed default to No for cofactors with qtlreaperzsloan
2021-02-11Removed some log statementszsloan
2021-02-11Ensure trait description_display is setzsloan
2021-02-10Fixed phenotype sample_data API request to use the correct trait IDszsloan
2021-02-10Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-02-10Changed parser.py to account for the ? wildcard in the same way as GN1, but ↵zsloan
I suspect GN1 isn't actually doing this correctly (might have to do with switch to MariaDB)
2021-02-10delete commented libsAlexander Kabui
2021-02-10replace jscolor in mapping_results.htmlAlexander Kabui
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