| Age | Commit message (Expand) | Author |
|---|---|---|
| 2020-08-31 | Use chroma from guix...* wqflask/wqflask/templates/correlation_matrix.html: Fetch chroma from guix profile | BonfaceKilz |
| 2020-08-31 | Merge pull request #428 from BonfaceKilz/chore/delete-datatables-extensions-f......Delete dataTables and it's extensions from git | BonfaceKilz |
| 2020-08-29 | Fixed issue where exporting traits would throw an error if a dataset's...group didn't have an InbredSetCode set in the DB * wqflask/utility/authentication_tools.py - Changed get_group_code to return an empty string instead of None if InbredSetCode doesn't exist for a dataset group * wqflask/wqflask/views.py - Changed zipped export filename to "export_(datetime)" instead of "collection_(datetime)" since this export can occur from both the collection page and the global search page | zsloan |
| 2020-08-29 | Fixed issue with exporting traits from multiple different groups from...the collection page (the filename wasn't being set) * wqflask/wqflask/views.py - Set filename to "collection_(datetime)" in export_traits_csv because it wasn't being set before | zsloan |
| 2020-08-28 | Delete dataTables and it's extensions from git...* wqflask/wqflask/static/new/packages/DataTables/: Delete folder. | BonfaceKilz |
| 2020-08-27 | Added logic that creates a user account if an e-mail is added to a group...that isn't already associated with a GN2 account and sends the user an e-mail; still need to test * wqflask/wqflask/group_manager.py - Added logic sending an invitation e-mail if user_details aren't found for any of the e-mails provided when adding users to a group | zsloan |
| 2020-08-27 | Added function for sending an invitation e-mail...* wqflask/wqflask/user_login.py - Added send_invitation_email function, which does what it says | zsloan |
| 2020-08-27 | Added manager_user.html because it was missing from git | zsloan |
| 2020-08-25 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-25 | Fixed issue in DatasetType that caused an error when trying to load new...datasets * wqflask/base/data_set.py - Added fetchone() to g.db.execute() which is what was causing the error | zsloan |
| 2020-08-25 | Merge pull request #427 from BonfaceKilz/Build/add-scientific-js-datatables-p......Build/add scientific js datatables plugin | zsloan |
| 2020-08-25 | This should fix an issue where the new qtlreaper wouldn't work properlty...with genotypes that only have cM positions * wqflask/wqflask/marker_regression/qtlreaper_mapping.py - parse_reaper_output is changed to check if cM and Mb exist in output when creating marker obs * wqflask/wqflask/marker_regression/run_mapping.py - Changed export_mapping_results to properly deal with all combinations of cM and Mb positions (both and either/or) | zsloan |
| 2020-08-25 | Merge pull request #425 from BonfaceKilz/refactor/extract-htmlgen-methods-to-......Refactor/extract htmlgen methods to wrapper class | zsloan |
| 2020-08-25 | Use scientific.js dataTables extension plugin from guix | BonfaceKilz |
| 2020-08-24 | Use natural.js dataTables extension plugin from guix | BonfaceKilz |
| 2020-08-24 | Remove non-keyword args...* wqflask/wqflask/marker_regression/display_mapping_results.py (HtmlGenWrapper)[create_image_tag]: Remove "src" and "alt" as function parameters. | BonfaceKilz |
| 2020-08-24 | Replace "HtmlGen" method calls with those from "HtmlGenWrapper"...* wqflask/wqflask/marker_regression/display_mapping_results.py (DisplayMappingResults): Replace direct calls to HtmlGen with methods from the constructed wrapper class "HtmlGenWrapper". | BonfaceKilz |
| 2020-08-24 | Add new wrapper class for HtmlGen method...* wqflask/wqflask/marker_regression/display_mapping_results.py: Add new class | BonfaceKilz |
| 2020-08-24 | Add tests for the HtmlGenWrapper class...* wqflask/tests/wqflask/marker_regression/test_display_mapping_results.py: Add new tests | BonfaceKilz |
| 2020-08-24 | Fix some pylint errors...* wqflask/wqflask/marker_regression/display_mapping_results.py: Remove unused imports and add fix some pylint errors | BonfaceKilz |
| 2020-08-24 | Remove unused imports...* wqflask/utility/Plot.py: Remove unused imports like "numarray". "numarray" is does not have py3 support so it's important to remove references to it. | BonfaceKilz |
| 2020-08-24 | Rename file...* wqflask/tests/wqflask/marker_regression/test_display_mapping_results.py: Rename test_display_marking_results.py to test_display_mapping_results.py | BonfaceKilz |
| 2020-08-24 | Fix failing test...* wqflask/tests/wqflask/api/test_gen_menu.py: Update assertion. Result data introduced in 092212df Signed-off-by: BonfaceKilz <bonfacemunyoki@gmail.com> | BonfaceKilz |
| 2020-08-24 | Fixed issue where im_drawer wasn't being set in drawHaplotypeBand...* wqflask/wqflask/marker_regression/display_mapping_results.py - defined im_drawer in drawHaplotypeBand to fix errror and removed an unused import | zsloan |
| 2020-08-24 | The function draw_rotated_text_ was writing an image to /tmp, which GN2...user apparently doesn't have access to, so I replaced it with a link to the dynamically set TEMPDIR * wqflask/utility/pillow_utils.py - Replaced "/tmp/" in image location with TEMPDIR | zsloan |
| 2020-08-22 | Set min-width for search result table, since the description column...often looks weird if it gets below a certain width * wqflask/wqflask/templates/search_result_page.html - Set min-width of table container div to 1500px since that seems to be a reasonable width that prevents the description column from getting too narrow | zsloan |
| 2020-08-20 | Changed Molecular Trait Datasets to Molecular Traits in the Type...drop-down on the home page * wqflask/wqflask/api_gen_menu.py - Changed where Molecular Trait Datasets was hardcoded to Molecular Traits | zsloan |
| 2020-08-20 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-20 | Use dataTables.colResize.js and naturalSort from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.colVis.min.js from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.bootstrap.css from guix | BonfaceKilz |
| 2020-08-20 | Use scroller.dataTables.min.css from guix | BonfaceKilz |
| 2020-08-20 | Use dataTables.colReorder.js from guix | BonfaceKilz |
| 2020-08-20 | Use jquery.dataTables.js from guix | BonfaceKilz |
| 2020-08-20 | Use dataTables.buttons.min.js from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.dataTables.min.css from guix | BonfaceKilz |
| 2020-08-19 | Added Invert button to collection page...* wqflask/wqflask/templates/collections/view.html - Added the Invert button back to the collection page; it was removed in the past but Rob decided it should be re-added | zsloan |
| 2020-08-19 | Tools used from the collection page now use all traits if no rows are...checked and there are fewer than 100 traits in the table * wqflask/wqflask/static/new/javascript/search_results.js - Created get_traits_from_table function to get the list of traits and check if none are selected, and also renamed the previous function also called get_traits_from_table to submit_traits_to_export_or_bnw since that better describes what the function does | zsloan |
| 2020-08-19 | Show short labels by default in Correlation Matrix...* wqflask/wqflask/templates/correlation_matrix.html - remove display: none for short label div | zsloan |
| 2020-08-17 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-18 | Fix positioning for many instances of text in the mapping figure...* wqflask/wqflask/marker_regression/display_mapping_results.py: Many text instances had their positions changed by the switch from piddle to PIL. Change various Y offsets and in some cases changing the logic of the way text is positioned related to its length and font size. * wqflask/wqflask/static/fonts/verdanab.ttf: Add bold Verdana, since there needs to be a separate font file for bold text. | zsloan |
| 2020-08-17 | Placed X/Y trait info before the table on the correlation scatterplot...page * wqflask/wqflask/templates/corr_scatterplot.html - reordered table and X/Y trait info divs | zsloan |
| 2020-08-10 | Add fonts for pillow...* wqflask/wqflask/marker_regression/display_mapping_results.py: replace piddle method with PIL.ImageFont * wqflask/wqflask/static/fonts: Add fonts in path | Pjotr Prins |
| 2020-08-08 | Add a basic test for test_display_marking_results.py...* wqflask/tests/wqflask/marker_regression/__init__.py: Add it * wqflask/tests/wqflask/marker_regression/test_display_marking_results.py: Check that PIL colors are being used instead of the deprecated Piddle colors. | BonfaceKilz |
| 2020-08-08 | Change Y Coodinate system...* wqflask/wqflask/marker_regression/display_mapping_results.py: Piddle seemed to centre text about the given Y coordinate, while Pillow requires specification to top-left corner of the text. This slight change means text all over the image is displaced somewhat, and this fixes the coordinate system for some of the text. | Muriithi Frederick Muriuki |
| 2020-08-08 | Fix placement for axes labels...* wqflask/wqflask/marker_regression/display_mapping_results.py: Fix the placement for the axes labels. | Muriithi Frederick Muriuki |
| 2020-08-08 | Use TEXT_Y_DISPLACEMENT instead of magic numbers...* wqflask/wqflask/marker_regression/display_mapping_results.py: Use TEXT_Y_DISPLACEMENT instead of magic numbers to help with making it clear that the drawn text is displaced somewhat. | Muriithi Frederick Muriuki |
| 2020-08-08 | Give rectangles black outlines...* wqflask/wqflask/marker_regression/display_mapping_results.py: Give the rectangles black outlines to correspond to earlier drawings. | Muriithi Frederick Muriuki |
| 2020-08-08 | Use new `draw_open_polygon()` utility...* wqflask/wqflask/marker_regression/display_mapping_results.py: Use the new `draw_open_polygon()` utility to draw open polygons. | Muriithi Frederick Muriuki |
| 2020-08-08 | Add draw_open_polygon() utility...* wqflask/utility/pillow_utils.py: New method. | Muriithi Frederick Muriuki |
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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