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2020-11-20Replace mistunes with markdown libraryBonfaceKilz
* wqflask/wqflask/markdown_routes.py (render_markdown): Use markdown library instead of mistunes.
2020-11-20Point url for fetching md content to gn-docs repoBonfaceKilz
* wqflask/wqflask/markdown_routes.py (render_markdown): Use gn-docs URL to fetch markdown content.
2020-11-20Remove glossary markdown templateBonfaceKilz
* wqflask/wqflask/static/markdown/: Delete folder. Files moved to https://github.com/genenetwork/gn-docs
2020-11-18Fixed issue where the cofactor trait descriptions didn't work correctlyzsloan
for genotype/snp cofactors (the code previously only accounted for probeset/phenotype cofactors, so it was treating genotypes/snps like phenotype traits)
2020-11-18Changed default Low/High colors for the correlation scatterplot cofactorzsloan
coloring to Blue/Red respectively (was originally Light Grey/Black)
2020-11-18Added some jquery closing the "Add To Collection" colorbox window afterzsloan
its form is submitted
2020-11-18Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-11-18Fixed issue that was causing scatterplot cofactors to not work if thezsloan
cofactors were genotypes (because it tried to get the "description_display" which doesn't exist for genotype traits)
2020-11-18Removed console.log and commented out statements fromzsloan
get_traits_from_collection.js
2020-11-18Fixed "back_to_collections" function in get_traits_from_collection.jszsloan
(function that lets you return from viewing a collection to viewing the list of collections when selecting cofactors for scatterplot)
2020-11-18Merge pull request #481 from Alexanderlacuna/test-SampleListBonfaceKilz
Test sample list
2020-11-16update refactored natural_sort function in show_trait/SampleList.pyAlexanderlacuna
2020-11-12Import fontawesome css/js and used its info character for glossary links on ↵zsloan
search results page
2020-11-12Substituted -log(p) with -logP as mentioned in Rob's e-mailzsloan
2020-11-12Show Mb positions to 6 decimal places in mapping results tablezsloan
2020-11-11Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-11-11Added Bonface to the footerzsloan
2020-11-11Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵BonfaceKilz
feature/add-glossary-page
2020-11-11Update image widthBonfaceKilz
2020-11-11Add basic markdown stylingBonfaceKilz
* wqflask/wqflask/static/new/css/markdown.css: New file. * wqflask/wqflask/templates/glossary.html: add markdown id to markdown container.
2020-11-10Changed logic for creating temp trait SampleList to account for both traits ↵zsloan
encoded as bytes and traits encoded as strings, since temp traits created before and after the Python 3 switchover will have different encoding
2020-11-10Fixed issue where strain values in bytes needed to be decoded when loading a ↵zsloan
Temp trait
2020-11-10Changed "BXD-Harvested" to "BXD-Longevity" since that group was renamed and ↵zsloan
using the wrong name was causing correlations to not work.
2020-11-10Add missing links and some markdown formatting(underline, bold)BonfaceKilz
* wqflask/wqflask/static/markdown/glossary.md: Update file.
2020-11-06Removed the page selection from the top of the table because it created an ↵zsloan
awkward gap between the column show/hide buttons and the table, and this table will be changed to use Scroller instead of paging soon regardless
2020-11-06Changed the show/hide column buttons to use DataTables API + a few other ↵zsloan
changes (for some reason none of my changes could be pushed from one of my local branches to origin/testing, so they're combined in this commit) - Fixed a couple column header glossary links to point to GN1 - Added trait_list.css for styling a couple elements common to similar pages (like correlations or view collection)
2020-11-06Added min-width for the divs containing the analysis tools and table ↵zsloan
options, since they would look weird if the window shrunk below a certain width Also made some indentation more consistent
2020-11-06Added new css file for pages that have trait list tables (not sure what else ↵zsloan
to call them, but pages like search results, view collection, and correlation results)
2020-11-06Increased the min-width for the show_trait page container div for all the ↵zsloan
accordion sections, since previously it could get too narrow and cause text to extend beyong the borders of each accordion area
2020-11-06After I changed some class names in the trait page to use - instead of _ (to ↵zsloan
keep naming consistent) I forgot to change the references in show_trait_mapping_tools.js (which broke the functionality of clicking a tab doing mapping)
2020-11-06remove whitespaceAlexanderlacuna
2020-11-06modify natural_sort and return list to avoid having side effectAlexanderlacuna
2020-11-06modify tests to for changes in the natural sort functionAlexanderlacuna
2020-11-06fix typoAlexanderlacuna
2020-11-05remove duplicatesAlexanderlacuna
2020-11-05add test for samplelist and show_traitAlexanderlacuna
2020-11-04Changed numeric-html sorting for the Tissue/Lit r columns to ↵zsloan
natural-minus-na so it deals with the "--" values * wqflask/wqflask/templates/correlation_page.html - Replaced numeric-html sorting with natural-minus-na for the lit/tissue r columns
2020-11-04Use new glossary link from glossary_blueprint in html templatesBonfaceKilz
2020-11-04Add missing imageBonfaceKilz
2020-11-04Add link markers to elements which are referenced from elsewhereBonfaceKilz
2020-11-04Update test_markdown_routesBonfaceKilz
* wqflask/tests/unit/wqflask/test_markdown_routes.py (test_render_markdown_when_fetching_locally): Fix failing test.
2020-11-04Add an edit link button to glossary pageBonfaceKilz
2020-11-04Wrap rendered content in div containerBonfaceKilz
2020-11-04Update glossary markdown fileBonfaceKilz
2020-11-04Merge pull request #475 from Alexanderlacuna/test-showtraitBonfaceKilz
Add more tests for show trait module
2020-11-04correct a typoAlexanderlacuna
2020-11-04remove extra whitespaceAlexanderlacuna
2020-11-04remove whitespace in line 119-120Alexanderlacuna
2020-11-04remove whitespaceAlexanderlacuna
2020-11-04remove whitespace and assertIsAlexanderlacuna
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