genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2013-07-03	Updated notes and created requirements.txt file	Zachary Sloan

2013-07-03	Made the table in the group manager sortable, etc	Zachary Sloan

2013-06-27	Created a group manager page where user administrators can create	Zachary Sloan
	groups of datasets to give/add read privileges to
2013-06-26	Merge /home/sam/gene	Zachary Sloan

2013-06-26	More signin changes	Sam

2013-06-26	Moved code creating DataSets object to a function in dataset.py	Zachary Sloan
	Added caching to creating DataSets object
2013-06-26	Got code that creates DataSets object running	Zachary Sloan
	Fixed one genofile that had extra quotation marks in the comments that caused an error Defaults mb_graph_interval to 1 for species without chromosome lengths in megabases
2013-06-25	Added DataSets class to dataset.py that will be used to create list of	Zachary Sloan
	confidential datasets
2013-06-21	Added a thank you for siging in message	Sam
	Fixed issues where homepage was reloaded in modal after siging in
2013-06-21	Merge /home/zas1024/gene	Sam

2013-06-21	Working on getting logins working again	Sam

2013-06-21	Fixed bug where cursor was still being used in query	Zachary Sloan

2013-06-20	Merge branch 'flask' of /home/sam/gene	Zachary Sloan
	Conflicts: wqflask/wqflask/templates/index_page.html
2013-06-20	Added file corr_result_helpers.py that includes the function that	Zachary Sloan
	normalizes the lists of sample values
2013-06-20	Fixed conflict of merge	Sam

2013-06-20	Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask	Zachary Sloan
	Conflicts: wqflask/requirements.txt wqflask/wqflask/correlation/show_corr_results.py
2013-06-20	Copied over Lei's correlation code from after he pushed yesterday	Zachary Sloan

2013-06-19	Added nginx_conf directory to git tracking	Lei Yan

2013-06-19	Fixed issue where the Mean Expr, Max LRS, and Max LRS Location columns	Lei Yan
	in the correlation page weren't displaying
2013-06-19	Merge branch 'flask' of git://github.com/zsloan/genenetwork into flask	Lei Yan
	Conflicts: wqflask/base/data_set.py
2013-06-19	:Merge git://github.com/zsloan/genenetwork into flask	Lei Yan
	Conflicts: wqflask/requirements.txt
2013-06-19	Changed QTL parameter name to "get_qtl_info" on trait.py and	Lei Yan
	other places it's called, like search_results.py Added other trait info fields to correlation results page
2013-06-19	When I pulled Sam's code the search page was changed from GET to	Zachary Sloan
	POST in views.py, so I had to change it back
2013-06-19	Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask	Zachary Sloan
	Conflicts: wqflask/base/data_set.py wqflask/wqflask/views.py Fixed a couple conflicts to merge Lei's code related to the correlation page
2013-06-14	Merge git://github.com/leiyan/GeneNetwork2-Python into flask	Zachary Sloan
	Conflicts: wqflask/requirements.txt Made small change for merge with Lei's branch
2013-06-13	Made a few changes while trying to figure out why the search isn't working	Zachary Sloan
	post-merging with Sam's code
2013-06-13	Merge /home/sam/gene into flask	Zachary Sloan
	Conflicts: wqflask/wqflask/templates/index_page.html Merging the code on Sam's branch onto my own
2013-06-13	Fixed issue where too much memory was used as a result of creating a	Lei Yan
	dataset object for each trait in the correlation results Added new fields/columns for each trait in the correlation result table (max LRS, max LRS location, mean expression) Fixed error if trait doesn't have these fields
2013-06-13	Put the template html for the quick search page when all trait types	Zachary Sloan
	are displayed in a separate file that is included in quick_search.html
2013-06-13	Small changes	Sam

2013-06-12	Fixed a couple issues with the template that caused the	Zachary Sloan
	regular search results and show trait page to not display
2013-06-11	Put trait info for correlation results page into a dictionary instead	Lei Yan
	of storing list of GeneralTrait objects Added print statements to track memory usage
2013-05-31	Fixed the location column for the quick search page	Zachary Sloan
	Began writing some jquery to automatically open the first tab within each species tab on the quick search page (not done yet)
2013-05-30	Rewrote some code in get_trait_info in dataset.py	Lei Yan
	Added spearman correlation to show_corr_results and template
2013-05-28	Have correlation values appearing in a table in the template	Lei Yan
	Use scipy to calculate pearson correlation instead of old GN code
2013-05-23	Worked on rewriting the function in data_set.py that gets the sample	Lei Yan
	values for each trait
2013-05-23	Changed the way the query that gets sample ids is generated	Lei Yan

2013-05-23	Now calculates correlation values for traits, but not yet in template	Lei Yan

2013-05-23	Added a template	Sam

2013-05-23	Lots of changes around users	Sam

2013-05-21	Added caching to the search page (for both regular and quick searckes)	Zachary Sloan

2013-05-17	Did a little work with quick search page	Zachary Sloan

2013-05-17	Simplification of modal code	Sam
	Created css file to hold modal padding
2013-05-17	Modal windows now working better	Sam
	Going to simplify the code next
2013-05-17	Added flask_security locally	Sam

2013-05-17	More working on security templates	Sam

2013-05-16	Switching between login and register working pretty well	Sam

2013-05-16	Made the first level of quick search tabs species, followed by	Zachary Sloan
	trait type (was the opposite before Rob commented on it earlier today)
2013-05-16	Before trying a new modal window	Sam

2013-05-10	Sign in template looking even better	Sam