genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2020-04-21	Update base.html	acenteno
	At the end of this text in the footer, it should read ....Jintao Wang, Robert W. Williams, and colleagues. We need to add Saunak Sen in the list right by Pjotr Prins. The link at the end to "colleagues" is broken.
2020-04-21	Update views.py	acenteno
	Add credits link
2020-04-21	Create credits.html	acenteno
	Colleagues credit page
2020-04-21	Update base.html	acenteno
	Fix footer colleagues link to credits
2020-04-21	Update tutorials.html	acenteno
	Updated to v7
2020-04-21	Update base.html	acenteno
	Change position to tutorials link
2020-04-21	Update tutorials.html	acenteno
	Fix the title header
2020-04-21	Create tutorials.html	acenteno
	Link to the actual power point presentation
2020-04-21	Update views.py	acenteno
	Add tutorials link under News
2020-04-21	Update base.html	acenteno

2020-04-16	Fixed issue that caused submitted traits to not open properly when submitted ↵	zsloan
	to a group with case attributes + fixed a link to GN1
2020-04-16	Changed and re-ordered tools on View Collection page in the same way as the ↵	zsloan
	search result and correlation pages
2020-04-16	Many changes, including:	zsloan
	- Added permutation strata option for R/qtl - Made a variety of aesthetic changes to collections-related pages - Made a variety of aesthetic changes to the multi-trait tool options on the search result and correlation pages - Made some functional changes to collections that prevent duplicate traits and ensure new traits are at the top - The "Default Collection" is now always at the bottom of the collection list and renamed to "Your Default Collection"
2020-04-16	Made change that causes new traits to be at the top of a collection + ↵	zsloan
	prevents duplicates
2020-04-13	Changed Locus to Marker in table and fixed an issue with trying to zoom in ↵	zsloan
	on a chromosome after downloading permutation results
2020-04-13	Fixed issue that caused export for HET3-ITP traits to not work due to the ↵	zsloan
	backslash in one of the case attribute names + added a couple links for stats table items
2020-04-06	Added Mean column for phenotype traits in search and global search result tables	zsloan

2020-04-04	Changed Y axis on permutation histogram from Frequency to Count	zsloan

2020-04-04	Updated R/qtl description text	zsloan

2020-04-04	Added Chart Studio back to trait page Plotly figures and switched the ↵	zsloan
	PNG/SVG download icons; also upgraded Plotly, though I'm sure we'll want to move that out of git later
2020-04-04	Indices on the trait page sample table are now static, to allow for ↵	zsloan
	selecting ranges of indices after sorting a column
2020-04-03	Added option to select cofactors from collection for R/qtl	zsloan
	Fixed some issues with displaying the R/qtl results from the RData HET3-ITP dataa
2020-04-03	Fixed permutation histogram to show correct LRS/LOD measure on X axis	zsloan

2020-04-02	Fixed a dumb issue that broke the buttons on trait list pages like search ↵	zsloan
	results or correlation results
2020-04-01	Forgot to rearrange search result page buttons in previous commit, plus ↵	zsloan
	fixed an issue where .csv was missing from some filenames
2020-04-01	Adding export option to correlation page	zsloan
	Added ability to control in code the export file name Reorganized View Collection options
2020-03-27	Fixed issue where GEMMA wasn't showing up for certain groups	zsloan

2020-03-27	Temporary fix for issue with RData rqtl results having shifted postiions	zsloan

2020-03-27	Added integration for using RData files with R/qtl, plus some other changes ↵	zsloan
	to how it decides which mapping methods to display on the trait page
2020-03-25	Added fix for issue when creating collections (related to hmac import change)	zsloan

2020-03-19	Made a minor change just to help qtlreaper deal with genotype files with ↵	zsloan
	positions in bases instead of megabases
2020-03-15	Fixed digits issue, though still need to figure out how to increase gap ↵	zsloan
	between y axis and title
2020-03-12	Added back a library that is apparently used for the Copy To Other ↵	zsloan
	Collection feature
2020-03-12	Made some changes to how the mapping Y axis is determined/drawn; left in the ↵	zsloan
	commented-out old code until we're sure this works well
2020-03-11	Fixed issue that caused authors to be displayed incorrectly sometimes	zsloan

2020-03-10	Added back macaque monkey to dropdown generation, not sure why it was ↵	zsloan
	removed; need to ask Rob
2020-03-10	Fixed issue that caused some problems when verifying hmac	zsloan

2020-03-09	It seems that the cause might be that my user session was still active on ↵	zsloan
	production, which made the logic not work
2020-03-09	Made change that hopefully fixes the Redis issue in production; I think it's ↵	zsloan
	because HGETALL returns an empty list instead of None
2020-03-09	I think I found the issue; I only saw it on production instead of my branch ↵	zsloan
	because it was tied to a session expiring
2020-03-09	Change that might fix issue on production	zsloan

2020-03-09	Added the option to change collection names	zsloan
	Remooved a couple imports that weren't used
2020-03-09	I think this should complete consolidating all the collections code.	zsloan

2020-03-03	I made a pretty big mistake removing this file; I forgot that it was still ↵	zsloan
	used for some collection stuff
2020-03-03	Missed one more reference in helper_functions	zsloan

2020-03-03	And needed to remove duplicate hmac file; I somehow didn't notice that only ↵	zsloan
	one of those needed to be used
2020-03-03	Forgot to replace code referring to hmac function user_manager	zsloan

2020-03-03	Also needed to remove the old login code	zsloan

2020-03-03	was missing a couple files in last commit	zsloan

2020-03-03	Refactored all the anonymous (not logged-in) user stuff so that both ↵	zsloan
	logged-in and anonymous users share the same code