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2019-06-09Fixed javascript error with phenotype global searchzsloan
2019-06-09Fixed issue that caused heatmap to not work (needed to tell it to use reaper ↵zsloan
for generating genotype object) Fixed issue that caused *all* collection page functions to not load correctly (datatables wasn't loading correctly due to a new column being added)
2019-06-09Added fix for error when records don't have mean expression in global searchzsloan
2019-06-07Global search and correlation results can handle null expression nowzsloan
2019-06-06Made some changes to REST API, including adding limit_to option to mappingzsloan
2019-06-06Replaced ISNULL with IFNULL (which is the correct version for MySQL)zsloan
Changed the query form for getting a species' groups
2019-06-05Ensured that a string is returned for SQL fields that can potentially be nullzsloan
2019-06-05Needed to replace single quotes with double quotes for JSON outputzsloan
2019-06-05Additive effects now display for manhattan plots when availablePjotr Prins
2019-06-05Issue where manhattan plot points went past the edge of the plot should be ↵zsloan
fixed now
2019-06-05Fixed issue that caused interval mapping to not work because the python ↵zsloan
implementation of the reaper Dataset object doesn't include the addinterval method (so for those situations I still use reaper) Fixed issue where the last chromosome wasn't displayed for mapping results (though still need to fix issue where points are drawn too far to the right when a specific range is viewed)
2019-06-04Updated drop-downs (this probably needs to be separated out of the git ↵zsloan
repository)
2019-06-04Changed the logic for deciding y axis digits to deal with situations where ↵zsloan
the range is less tan 0.4; not sure if more than this needs to be accounted for
2019-06-04Fixed issue with probability plot y axis digitszsloan
2019-06-04Merge branch 'api' of github.com:zsloan/genenetwork2 into testingzsloan
2019-06-04Added GeneMANIA linkzsloan
Fixed issue that caused error when creating UCSC RefSeq link Fixed issue that sometimes caused an error for phenotype searches Changed some text on collections page
2019-05-31Added option to get just trait names from traits query, and also fixed ↵zsloan
sample_data query to avoid duplicates
2019-05-29Added option to get traits from dataset to APIzsloan
2019-05-24Fixed issue where change to making sample table unchecked made all figures ↵zsloan
not show up
2019-05-24Merge branch 'testing' of github.com:genenetwork/genenetwork2 into apizsloan
2019-05-24Added status to error messageszsloan
2019-05-24Return JSON error instead of html nowzsloan
2019-05-24Made a few changes to trait page:zsloan
- Changed y axis digits for some figures - Changed title for some figures to trait ID - Removed Min Expr filter when correlating with phenotypes - Changed some button colors - Made sample table rows highlightable
2019-05-24Added currently api progress, which will henceforth be appropriately ↵zsloan
committed in this branch
2019-05-24Replaced qtlreaper Dataset object with python objectzsloan
2019-05-23Fixed issue where some descriptions caused an errorzsloan
2019-05-17Made check for trait IDs a bit more secure to hopefully avoid any errors ↵zsloan
similar to the previous one with a missing unigene id
2019-05-17Fixed issue that caused error for traits with no unigene idzsloan
2019-05-14Added all of the third party links from GN1zsloan
Fixed issue with the script that generates the drop-down menus where phenotype/genotype datasets wouldn't show up for species without any mRNA assay datasets Added icon for smartphones/tablets Made error more informative for main search Added gene symbol column to collections (need to add something that removes the column if it's all empty)
2019-05-08Fixed issue where descriptions sometimes had unicode characters appear strangelyzsloan
2019-05-07Added link to GeneBridge to trait pagezsloan
2019-05-07Fixed issue where, if the user searched for a location range in the SNP ↵zsloan
Browser, it often wouldn't correctly identify when markers were on genes
2019-05-06Removed horizontal scroll from twitter field on index pagezsloan
2019-05-06Added link to Affiliates section of index pagezsloan
2019-05-06Made some changes Rob asked for to index page; reorganized some items and ↵zsloan
made news scrollable
2019-05-06Removed some unused imports of htmlgenzsloan
Fixed a bug that sometimes occurred in search results Changed order of items on index page
2019-04-26Issue where GEMMA LOCO mapping didn't work when samples were edited out ↵zsloan
should be fixed now
2019-04-26Fixed issue where changed smaple values didn't show up in haplotype analyst ↵zsloan
results
2019-04-18Fixed issue that caused removed strains to still appear in the haplotype ↵zsloan
analyst track
2019-04-12Fixed PDF links in reference to point to the PDFs in GN1zsloan
2019-04-12- Improved Interval Analyst table appearance in mapping resultszsloan
- Made the text on the "Forgot Password" page more simple and less cluttered - Added line to index page about RANGE search function - Fixed bar chart on trait page so that it sets the bottom margin depending upon the longest sample name length
2019-04-10Removed option to upload file for submitting traits, since it doesn't ↵zsloan
currently work
2019-04-10Fixed issue that was causing submitted temp traits to not workzsloan
2019-04-05Fixed issue that caused error for phenotype searches (kind of a quick fix ↵zsloan
and I do a try/except for whether it can build the trait object; ideally I should correctly filter out datasets)
2019-04-05Fixed issue where Max LRS column displayed the mean in global search resultszsloan
2019-04-04Fixed issue where dataset_menu_structure.json included some groups with no ↵zsloan
visible datasets
2019-04-03Fixed an issue that caused global phenotype search to often not work and ↵zsloan
certain phenotype datasets to not show up in drop-downs
2019-04-03Fixed issue where strains could be added twice in the SNP browser, causing ↵zsloan
some wonky behavior
2019-04-02Fixed issue where non-GEMMA mapping would throw an error because it would ↵zsloan
still look for the results filename
2019-03-29Fixed issue that caused PCA results to be different in GN2 than in GN1; one ↵zsloan
result needed to be transposed
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