genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2016-04-29	URL: removed _blank from first URL	Pjotr Prins

2016-04-29	Updated mailing list URL	Pjotr Prins

2016-04-29	Plotting: using cairo-png for headless environments	Pjotr Prins

2016-04-29	Merge	Pjotr Prins

2016-04-28	Added option to export permutation results for mapping page	zsloan
	Added data_scale to dataset objects and basic stats table will now check data scale when calculating range Made interval analyst results table work with datatables Changed the appearance of the basic stats table some by giving it a border
2016-04-28	Changed the defunct GeneRIF URL to a working Wikipedia URL (which	Pjotr Prins
	also points to the non-working NCBI link)
2016-04-26	Interval mapping: fix font and image path	Pjotr Prins

2016-04-26	Merging with Zach's latest branch	Pjotr Prins

2016-04-25	Interval Analyst table mostly working, just need to work out a few more things	zsloan

2016-04-22	Fixed issue where manhattan plot setting wasn't being carried over to single ↵	zsloan
	chromosome view for mapping results Removed a useless "if 1 == 1" line that was in marker_regression_gn1.py for testing.
2016-04-20	Interval Mapping now correctly does interval mapping if Marker Regression ↵	zsloan
	isn't checked (it used to just "connect the dots" of the marker regression output) Changed "Manhattan Plot" label to "Marker Regr." to accurately reflect what the option does
2016-04-20	Added borders to stats table in trait page	zsloan

2016-04-20	Fix typo	Pjotr Prins

2016-04-20	A few fixes to get the webserver running again	Pjotr Prins

2016-04-20	Add file	Pjotr Prins

2016-04-20	trasnform to transform	DannyArends

2016-04-20	Changed the file stem of generated pictures to CTL	DannyArends

2016-04-20	Adding small figures per trait, so that users can see CTL and QTL for each ↵	DannyArends
	individual phenotype
2016-04-20	Adding parameters, and passing them to the CTL algorithm	DannyArends

2016-04-20	Working on the output template of CTL	DannyArends

2016-04-20	Updates to the CTL code adding the significant results to the result object	DannyArends

2016-04-20	Cleaning code, adding comments	DannyArends

2016-04-20	Adding the lineplot image to the output	DannyArends

2016-04-20	Adding code to do initial CTL mapping (working on the BXD)	DannyArends

2016-04-20	Parsing the names of the individuals, and coding H as -999	DannyArends

2016-04-20	Minor changes to the CTL setup template	DannyArends

2016-04-20	Using the geno parser to get/parse the genotypes for the dataset	DannyArends

2016-04-20	Adding the geno file parser from Zach	DannyArends

2016-04-20	Creating the analysis object and passing results to the results template	DannyArends

2016-04-20	[PATCH 082/100] Testing passing information between the templates	DannyArends

2016-04-20	Loading the library and mapping the scan function	DannyArends

2016-04-20	Connecting the CTL analysis to the collection overview, by adding a button	DannyArends

2016-04-20	Adding initial file to perform CTL analysis	DannyArends

2016-04-20	[PATCH 078/100] Adding empty templates for CTL in GN2	DannyArends

2016-04-20	Cleaning up the WGCNA parameter input template	DannyArends

2016-04-20	[PATCH 061/100] Put R/qtl .cross file in TMPDIR	Pjotr Prins

2016-04-20	Show error when GENODIR is missing	Pjotr Prins

2016-04-20	Remove dbdoc	pjotrp

2016-04-20	Removed symlinks	pjotrp

2016-04-20	r-wgcna: Fix paths	pjotrp

2016-04-20	More hard-coded	pjotrp

2016-04-20	[PATCH 050/100] Using out-of-tree storage. Added comments for plink,	Pjotr Prins
	gemma.
2016-04-20	[PATCH 049/100] SNP_PATH: removal	Pjotr Prins

2016-04-20	[PATCH 047/100] This commit moves the image generation dir outside the git ↵	Pjotr Prins
	repository.
2016-04-20	external program should fail on return value not zero	pjotrp

2016-04-20	[PATCH 045/100] Reverted on previous changes. With a corrected	Pjotr Prins
	python2-piddle module the thing works. Turns out that the version we are using is not the same as the public one. Despite the same version number.
2016-04-20	Minor fixes	pjotrp

2016-04-20	[PATCH 042/100] Sanitizing locations	Pjotr Prins

2016-04-20	[PATCH 041/100] Fixes for running tools	Pjotr Prins

2016-04-20	When a sample does not exist we should not set sample_data to None. Better ↵	pjotrp
	to leave it out so it never gets processed again.